DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Hrb87F and AT3G12640

DIOPT Version :9

Sequence 1:	NP_001163602.1	Gene:	Hrb87F / 48535	FlyBaseID:	FBgn0004237	Length:	385	Species:	Drosophila melanogaster
Sequence 2:	NP_001325953.1	Gene:	AT3G12640 / 820444	AraportID:	AT3G12640	Length:	662	Species:	Arabidopsis thaliana

Alignment Length:	374	Identity:	74/374 - (19%)
Similarity:	117/374 - (31%)	Gaps:	130/374 - (34%)

- Green bases have known domain annotations that are detailed below.

  Fly     1 MAEQNDSNGNYDDGEEITEPEQLRKLFIGGLDYR---TTDDGLKAHFEK-WGNIVDVVVMKDPKT 61
            ::.:::.:.|:..|:|..:.:..:.|...|:.:.   |.|.||...|.. .|.:...|.:..|.|
plant   308 VSPKDEESRNFSQGQEAVQLQYTQSLANNGVYFENMTTNDTGLNPDFSSDRGRLGSSVNVSHPST 372

  Fly    62 KRSRGFGFITYSQSYMID--------NAQNARP-----HK-------ID-GRTV--EPKRAVP-- 101
            ............|..::|        |.||..|     ||       || |:||  |.:|.:|
plant   373 YLGNRINNPNSLQHRLVDDSKRVKGTNYQNRLPEVATKHKTASFSGNIDTGKTVKLEEQRKIPDV 437

  Fly   102 ---------------------RQEIDSPNAG-------ATVKK---------------------- 116
                                 .|:|.....|       |:||:
plant   438 GLQRYMDEGRLVSSEATTQLSTQKILGDTIGNGNVKPAASVKEESTTNKSVPGTLSTTRPLEDAS 502

  Fly   117 ---LFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTH 178
               :||..:.....::.|..:|..||:::...||:|..||:..|.|:|||...:..:..:.....
plant   503 SRTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAENALSLDGT 567

  Fly   179 SIKNKTLDVKKAIAKQDMDRQGGGGGRGGPRAGGRGGQGDRGQGGGGWGGQNRQNGGGNWGGAGG 243
            |..::.|.:.|                      |..||.........|               ..
plant   568 SFMSRILKIVK----------------------GSNGQNQEAASSMSW---------------SR 595

  Fly   244 GGGFGNSGGNFGGG--------QGGG-SGGWNQQGGSGGGPWNNQGGGN 283
            ||.|..:...|.||        :||| |..|.:.....|.  ||....|
plant   596 GGRFTRAPSYFRGGAVRGRSVVRGGGRSMQWKRDSADTGN--NNNVAPN 642

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Hrb87F	NP_001163602.1	RRM1_hnRNPA_like	25..102	CDD:241022	27/126 (21%)
Hrb87F	NP_001163602.1	RRM_SF	116..188	CDD:302621	18/96 (19%)
AT3G12640	NP_001325953.1	PWI	23..86	CDD:413375
		SF-CC1	<450..>596	CDD:273721	29/182 (16%)
		RRM	505..576	CDD:214636	18/70 (26%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910