DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb87F and trnau1apb

DIOPT Version :10

Sequence 1:NP_476806.2 Gene:Hrb87F / 48535 FlyBaseID:FBgn0004237 Length:385 Species:Drosophila melanogaster
Sequence 2:NP_001025137.2 Gene:trnau1apb / 791478 ZFINID:ZDB-GENE-040426-2386 Length:316 Species:Danio rerio


Alignment Length:182 Identity:41/182 - (22%)
Similarity:79/182 - (43%) Gaps:16/182 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 QLRKLFIGGLDYRTTDDGLKAHFEKWGNIV-DVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNAR 85
            ::..|::|.||....::.:|..|...|... .|.::....|..|.|:.|:..:....:|..    
Zfish     4 RMTSLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRC---- 64

  Fly    86 PHKIDGRTVEPKRAVPRQ-EIDSPNAGATVK-----KLFVGGLRDDHDEECLREYF-KDFGQIVS 143
            ..:::|:.| |....||: :::....|...:     .:|||.|..:.|:..|.::| |.|.....
Zfish    65 VQRLNGKLV-PGSNPPRKFKLNYATYGKRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKKFPSCKG 128

  Fly   144 VNIVSDKDTGKKRGFAFIEFDDYDPVDKII--LQKTHSIKNKTLDVKKAIAK 193
            ..:|:| ..|..||:.|::|.|.:...|.:  .|....:..|.:.:..|:.|
Zfish   129 AKVVTD-PYGNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRISIAVNK 179

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb87FNP_476806.2 RRM1_hnRNPA_like 25..102 CDD:409992 16/77 (21%)
RRM_SF 116..188 CDD:473069 20/74 (27%)
trnau1apbNP_001025137.2 RRM1_SECp43 7..90 CDD:410022 18/87 (21%)
RRM2_SECp43 98..179 CDD:410024 21/81 (26%)
Trnau1ap 211..311 CDD:465438
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 239..285
Blue background indicates that the domain is not in the aligned region.

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