DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb87F and Boll

DIOPT Version :9

Sequence 1:NP_001163602.1 Gene:Hrb87F / 48535 FlyBaseID:FBgn0004237 Length:385 Species:Drosophila melanogaster
Sequence 2:NP_001355696.1 Gene:Boll / 75388 MGIID:1922638 Length:340 Species:Mus musculus


Alignment Length:137 Identity:41/137 - (29%)
Similarity:69/137 - (50%) Gaps:19/137 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    81 AQNARPHKIDGRTVEPKRAVPRQEIDSPNAG---ATV--KKLFVGGLRDDHDEECLREYFKDFGQ 140
            ||:....:.|..:..|....| ..:::|.:|   .||  .::||||:....:|..||::|..:|.
Mouse     7 AQSTNQTQTDSLSPSPNPVSP-VPLNNPTSGPRYGTVIPNRIFVGGIDFKTNENDLRKFFSQYGS 70

  Fly   141 IVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSI--KNKTLDVKKAIAKQDMDRQGGGG 203
            :..|.||:|: .|..:|:.||.|:..:...| |||:...:  |:|.|::..||.||.:       
Mouse    71 VKEVKIVNDR-AGVSKGYGFITFETQEDAQK-ILQEAEKLNYKDKKLNIGPAIRKQQV------- 126

  Fly   204 GRGGPRA 210
              |.||:
Mouse   127 --GIPRS 131

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb87FNP_001163602.1 RRM1_hnRNPA_like 25..102 CDD:241022 4/20 (20%)
RRM_SF 116..188 CDD:302621 25/73 (34%)
BollNP_001355696.1 RRM_BOULE 43..123 CDD:241117 27/81 (33%)
PABP-1234 <45..293 CDD:130689 32/98 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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