DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hrb87F and Rbm31y

DIOPT Version :9

Sequence 1:NP_001163602.1 Gene:Hrb87F / 48535 FlyBaseID:FBgn0004237 Length:385 Species:Drosophila melanogaster
Sequence 2:NP_083246.1 Gene:Rbm31y / 74484 MGIID:1921734 Length:565 Species:Mus musculus


Alignment Length:200 Identity:70/200 - (35%)
Similarity:110/200 - (55%) Gaps:9/200 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 EQNDSNGNYDDGEEI--TEPEQ-LRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRS 64
            |:::....:.:|.:|  |:.:| ..|:|||||....:...|..:..|:|.|:|.::..||.|..|
Mouse     9 EKDNETEQFREGFKIDATKNQQDASKMFIGGLSQEMSKQVLLEYLSKFGEIIDFIIKTDPNTGLS 73

  Fly    65 RGFGFITYSQSYMIDNAQNARPHKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEE 129
            |||||:.:..|..::.....:.||:||:.:|.||| ...|...||     ||:|||||.....||
Mouse    74 RGFGFVLFKDSATVEKVLQVKDHKVDGKKIEFKRA-KALESQFPN-----KKIFVGGLNPRLSEE 132

  Fly   130 CLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKAIAKQ 194
            .:|.||..||||.::.:....||.::|.|.||::.|.:.|.|::..:.|.|.:...:||.|..|:
Mouse   133 KIRAYFGTFGQIEAIELPLCSDTRERRAFGFIKYMDENSVRKVLENRYHFIGSSRCEVKMAYPKE 197

  Fly   195 DMDRQ 199
            :..||
Mouse   198 NPARQ 202

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb87FNP_001163602.1 RRM1_hnRNPA_like 25..102 CDD:241022 29/76 (38%)
RRM_SF 116..188 CDD:302621 26/71 (37%)
Rbm31yNP_083246.1 RRM_SF 35..108 CDD:302621 26/72 (36%)
RRM_SF 119..193 CDD:302621 28/73 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.