DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hrb87F and Dazap1

DIOPT Version :9

Sequence 1:NP_001163602.1 Gene:Hrb87F / 48535 FlyBaseID:FBgn0004237 Length:385 Species:Drosophila melanogaster
Sequence 2:NP_001365924.1 Gene:Dazap1 / 70248 MGIID:1917498 Length:407 Species:Mus musculus


Alignment Length:421 Identity:121/421 - (28%)
Similarity:167/421 - (39%) Gaps:104/421 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 EQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNAR 85
            :::.|||:||||:.||.:.|:::|.::|.:||.|:|||..|.:||||||:.:.....:.....:|
Mouse     7 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71

  Fly    86 PHKIDGRTVEPKRAVPR---QEIDSPNAG---------ATVKKLFVGGLRDDHDEECLREYFKDF 138
            ||.:|||.::||...||   .|...|..|         :...|:||||:..:..|..||||||.|
Mouse    72 PHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKF 136

  Fly   139 GQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKAIAKQDMDRQGG-- 201
            |.:..|.::.|.:..:.|||.||.|:|...||:.:....|.|..|.::||:|..:...::..|  
Mouse   137 GVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKNQAPGQP 201

  Fly   202 GGGRGGPRAGGRGGQGDRGQGGGGWGGQNRQNGGGNWGGAGGG-GGFG----------------- 248
            |..:.|.|.......|..||....|  |......|.|..||.. ||:|                 
Mouse   202 GASQWGSRVAPSAANGWAGQPPPTW--QQGYGPQGMWVPAGQAIGGYGPPPAGRGAPPPPPPFTS 264

  Fly   249 ----NSGGNFGGGQGGGSG-GWNQQGGSGGGP--------------------------------- 275
                ...|.|...||...| |...|...|.||                                 
Mouse   265 YIVSTPPGGFPPPQGFPQGYGAPPQFSFGYGPPPPPPDQFAPPGVPPPPATPGAAPLAFPPPPSQ 329

  Fly   276 ----WNNQGGGNGGWNGGGGGGYGGGNSNGSWGGNGGGGGGGGGFGNEYQQ--SYGGGPQRNSNF 334
                .:........:..|...|||...|           |.|.||.:..||  ||||        
Mouse   330 AAPDMSKPPTAQPDFPYGQYAGYGQDLS-----------GFGQGFSDPSQQPPSYGG-------- 375

  Fly   335 GNNRPAPYSQGG---GGGGFNKGNQGGGQGF 362
                |:....||   ||.||.:|.....|||
Mouse   376 ----PSVPGSGGPPAGGSGFGRGQNHNVQGF 402

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb87FNP_001163602.1 RRM1_hnRNPA_like 25..102 CDD:241022 33/76 (43%)
RRM_SF 116..188 CDD:302621 28/71 (39%)
Dazap1NP_001365924.1 RRM1_DAZAP1 11..92 CDD:409988 35/80 (44%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 74..117 11/42 (26%)
RRM2_DAZAP1 111..190 CDD:409765 31/78 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR48027
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.