DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb87F and Slirp

DIOPT Version :10

Sequence 1:NP_476806.2 Gene:Hrb87F / 48535 FlyBaseID:FBgn0004237 Length:385 Species:Drosophila melanogaster
Sequence 2:NP_001102977.1 Gene:Slirp / 688717 RGDID:1585290 Length:111 Species:Rattus norvegicus


Alignment Length:76 Identity:20/76 - (26%)
Similarity:35/76 - (46%) Gaps:0/76 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 FIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNARPHKIDG 91
            ||..:.:......|:.||.::|::....|..|.:|...||.|::.:|....:.||.....|.|||
  Rat    22 FIRKIPWTAASSELREHFAQFGHVRRCTVPFDKETGFHRGMGWVQFSSQEELQNALQEEHHIIDG 86

  Fly    92 RTVEPKRAVPR 102
            ..:..:...|:
  Rat    87 VEIHVQPQKPK 97

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb87FNP_476806.2 RRM1_hnRNPA_like 25..102 CDD:409992 19/74 (26%)
RRM_SF 116..188 CDD:473069
SlirpNP_001102977.1 RRM_SLIRP 21..92 CDD:409688 19/69 (28%)
Blue background indicates that the domain is not in the aligned region.

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