DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment Hrb87F and Pabpc6

DIOPT Version :9

Sequence 1:	NP_001163602.1	Gene:	Hrb87F / 48535	FlyBaseID:	FBgn0004237	Length:	385	Species:	Drosophila melanogaster
Sequence 2:	NP_001157308.1	Gene:	Pabpc6 / 67543	MGIID:	1914793	Length:	643	Species:	Mus musculus

Alignment Length:	197	Identity:	51/197 - (25%)
Similarity:	92/197 - (46%)	Gaps:	36/197 - (18%)

- Green bases have known domain annotations that are detailed below.

  Fly    23 LRK-----LFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQ 82
            |||     :|:..||.......|...|..:|||:...|:.|  ...|:|:||:.:...   :.|:
Mouse    93 LRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQ---EEAE 152

  Fly    83 NA---------RPHKIDGRTVEPKRAVPRQEIDSPNAGATVKK---LFVGGLRDDHDEECLREYF 135
            .|         ..||:.....:.:|  .||    ...||..|:   :::..|.:|.|:|.|::.|
Mouse   153 RAIEKMNGMFLNDHKVFVGRFKSRR--DRQ----AELGARAKEFTNVYIKNLGEDMDDERLQDLF 211

  Fly   136 KDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKAI---AKQDMD 197
            ..||..:||.:::| ::||.:||.|:.|:.::...|.:    ..:..|.|:.|:..   |::.::
Mouse   212 GRFGPALSVKVMTD-ESGKSKGFGFVSFERHEDARKAV----EEMNGKDLNGKQIYVGRAQKKVE 271

  Fly   198 RQ 199
            ||
Mouse   272 RQ 273

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Hrb87F	NP_001163602.1	RRM1_hnRNPA_like	25..102	CDD:241022	20/90 (22%)
Hrb87F	NP_001163602.1	RRM_SF	116..188	CDD:302621	20/74 (27%)
Pabpc6	NP_001157308.1	PABP-1234	11..622	CDD:130689	51/197 (26%)
		RRM1_I_PABPs	12..91	CDD:240824
		RRM2_I_PABPs	97..172	CDD:240825	18/79 (23%)
		RRM3_I_PABPs	190..269	CDD:240826	22/83 (27%)
		RRM4_I_PABPs	303..380	CDD:240827
		PABP	554..621	CDD:279051
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910