DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb87F and RBM3

DIOPT Version :9

Sequence 1:NP_001163602.1 Gene:Hrb87F / 48535 FlyBaseID:FBgn0004237 Length:385 Species:Drosophila melanogaster
Sequence 2:NP_006734.1 Gene:RBM3 / 5935 HGNCID:9900 Length:157 Species:Homo sapiens


Alignment Length:227 Identity:65/227 - (28%)
Similarity:87/227 - (38%) Gaps:82/227 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   116 KLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSI 180
            |||||||..:.||:.|.::|..||.|..|.:|.|::|.:.|||.||.|.:.:          |: 
Human     7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPE----------HA- 60

  Fly   181 KNKTLDVKKAIAKQDMDRQGGGGGRGGPRAGGR------GGQGDRGQGGGGWGGQNRQNGGGNWG 239
                     ::|.:.|:         |....||      .|:..||..|||:|...|        
Human    61 ---------SVAMRAMN---------GESLDGRQIRVDHAGKSARGTRGGGFGAHGR-------- 99

  Fly   240 GAGGGGGFGNSGGNFGGGQGGGSGGWNQQGGSGGGPWNNQGGGNGGWNGGGGGGYGGGNSNGSWG 304
                    |.|....||.||.|||.:..                   :..||.|||.|.|....|
Human   100 --------GRSYSRGGGDQGYGSGRYYD-------------------SRPGGYGYGYGRSRDYNG 137

  Fly   305 GNGGGGGGGGGFGNEYQQSYGGGPQRNSNFGN 336
            .|.||          |.: |.||..|: |:.|
Human   138 RNQGG----------YDR-YSGGNYRD-NYDN 157

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb87FNP_001163602.1 RRM1_hnRNPA_like 25..102 CDD:241022
RRM_SF 116..188 CDD:302621 25/71 (35%)
RBM3NP_006734.1 RRM_CIRBP_RBM3 6..85 CDD:409883 31/106 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 81..157 34/122 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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