DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb87F and SC35

DIOPT Version :10

Sequence 1:NP_476806.2 Gene:Hrb87F / 48535 FlyBaseID:FBgn0004237 Length:385 Species:Drosophila melanogaster
Sequence 2:NP_652612.1 Gene:SC35 / 53444 FlyBaseID:FBgn0265298 Length:195 Species:Drosophila melanogaster


Alignment Length:276 Identity:55/276 - (19%)
Similarity:83/276 - (30%) Gaps:112/276 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 SNGNYDDGEEITEP----EQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGF 67
            |||....|.....|    :.:..|.:..|.||||.:.|:..||:.|.:.|:.:.:|..|:.||||
  Fly     2 SNGGGAGGLGAARPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGF 66

  Fly    68 GFITYSQSYMIDNAQNARPHKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLR 132
            .|:.:......::|..|    :|||.::.:.                                ||
  Fly    67 AFVRFYDKRDAEDALEA----MDGRMLDGRE--------------------------------LR 95

  Fly   133 EYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKAIAKQDMD 197
            .....:|:..|   .:...:|::.|                                        
  Fly    96 VQMARYGRPSS---PTRSSSGRRGG---------------------------------------- 117

  Fly   198 RQGGGGGRGGPR------------AGGRGGQGDRGQGGGGWGGQNRQNGGGNWGGAGGGGGFGNS 250
              |||||.||.|            ...|.....|.:..|....:.|..             |..|
  Fly   118 --GGGGGSGGRRRSRSRSPMRRRSRSPRRRSYSRSRSPGSHSPERRSK-------------FSRS 167

  Fly   251 --GGNFGGGQGGGSGG 264
              .|:...|.|.||||
  Fly   168 PVRGDSRNGIGSGSGG 183

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb87FNP_476806.2 RRM1_hnRNPA_like 25..102 CDD:409992 23/76 (30%)
RRM_SF 116..188 CDD:473069 6/71 (8%)
SC35NP_652612.1 RRM_SRSF2_SRSF8 25..97 CDD:409751 25/107 (23%)

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