DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hrb87F and Hnrnpa2b1

DIOPT Version :10

Sequence 1:NP_476806.2 Gene:Hrb87F / 48535 FlyBaseID:FBgn0004237 Length:385 Species:Drosophila melanogaster
Sequence 2:NP_001361674.1 Gene:Hnrnpa2b1 / 53379 MGIID:104819 Length:353 Species:Mus musculus


Alignment Length:372 Identity:173/372 - (46%)
Similarity:222/372 - (59%) Gaps:42/372 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 EPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQN 83
            |.||.||||||||.:.||::.|:.::|:||.:.|.|||:||.:||||||||:|:|....:|.|..
Mouse    16 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80

  Fly    84 ARPHKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVS 148
            ||||.||||.|||||||.|:|...|.|..|||||||||:::|.:|..||:||:::|:|.::.|::
Mouse    81 ARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIIT 145

  Fly   149 DKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKAIAKQDMDR-QGGGGGRGGPRAGG 212
            |:.:||||||.|:.|||:||||||:|||.|:|.....:|:||:::|:|.. |....||     ||
Mouse   146 DRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGR-----GG 205

  Fly   213 RGGQGDRGQGGGGWGGQNRQNGGGNWGGAGGGGGFGNSGGNFGGGQGGGSGGWNQQGGSGGGPWN 277
            ..|.||...|||.:|.....|..|...|.|.|.|||:....:|||.|||:        .||.|  
Mouse   206 NFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGGN--------FGGSP-- 260

  Fly   278 NQGGGNGGWNGGG------GGGYGGGNSNGSWGGNGGGGGGGGGFGNEYQQSYGGGPQRNSNFGN 336
            ..|||.||:.|||      |||||||..|  :||...|.|....|||..||....||.::.|||.
Mouse   261 GYGGGRGGYGGGGPGYGNQGGGYGGGYDN--YGGGNYGSGSYNDFGNYNQQPSNYGPMKSGNFGG 323

  Fly   337 NRPAPYSQGGGGGGFNKGNQGGGQGFAGNNYNTGGGGQGGNMGGGNR 383
            :|                |.||..|  |.||..||.|..|..||.:|
Mouse   324 SR----------------NMGGPYG--GGNYGPGGSGGSGGYGGRSR 352

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb87FNP_476806.2 RRM1_hnRNPA_like 25..102 CDD:409992 46/76 (61%)
RRM_SF 116..188 CDD:473069 37/71 (52%)
Hnrnpa2b1NP_001361674.1 Nuclear localization signal. /evidence=ECO:0000255 9..15
RRM1_hnRNPA2B1 19..99 CDD:410155 48/79 (61%)
RRM2_hnRNPA2B1 112..191 CDD:409995 41/78 (53%)
Disordered. /evidence=ECO:0000250|UniProtKB:P22626 193..353 75/195 (38%)
HnRNPA1 302..326 CDD:463312 11/39 (28%)
Nuclear targeting sequence. /evidence=ECO:0000250 308..347 19/56 (34%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.