DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb87F and AT5G03495

DIOPT Version :9

Sequence 1:NP_001163602.1 Gene:Hrb87F / 48535 FlyBaseID:FBgn0004237 Length:385 Species:Drosophila melanogaster
Sequence 2:NP_001078524.1 Gene:AT5G03495 / 5008197 AraportID:AT5G03495 Length:226 Species:Arabidopsis thaliana


Alignment Length:143 Identity:33/143 - (23%)
Similarity:53/143 - (37%) Gaps:28/143 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 KLFIGGLDYR----TTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNAR 85
            |:.:.|.|.|    |....|:.||...|.|..:.|.:|    ..||   |..|.::|....:...
plant    30 KISVEGYDTRLREYTVKLVLEKHFASCGKITHIYVPRD----FERG---ILKSVAFMCIKGEGGE 87

  Fly    86 PHKI-------DGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEEC---------LREY 134
            ...:       .|.|...|.|:.::||..|.... :.||....:|....:.|         |.|:
plant    88 EKALLLSGTDAGGWTAIVKPALWQKEIMDPWLPG-MPKLETHRVRVTGYDTCVPKIDIQMALCEH 151

  Fly   135 FKDFGQIVSVNIV 147
            |...|::..|.::
plant   152 FSSCGEVTQVVVL 164

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb87FNP_001163602.1 RRM1_hnRNPA_like 25..102 CDD:241022 21/87 (24%)
RRM_SF 116..188 CDD:302621 9/41 (22%)
AT5G03495NP_001078524.1 RRM_SF 30..108 CDD:302621 20/84 (24%)
RRM_SF 132..198 CDD:302621 6/33 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1202220at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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