Protein Alignment Hrb87F and msi1

DIOPT Version :9

• Sequence 1: NP_001163602.1
• Gene: Hrb87F / 48535
• FlyBaseID: FBgn0004237
• Length: 385
• Species: Drosophila melanogaster
• Sequence 2: XP_012816886.1
• Gene: msi1 / 496961
• XenbaseID: XB-GENE-490596
• Length: 347
• Species: Xenopus tropicalis
• Alignment Length: 181
• Identity: 71/181 - (39%)
• Similarity: 110/181 - (60%)
• Gaps: 2/181 - (1%)

  Fly    25 KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNARPHKI 89
            |:|||||.::||.:||:.:|..:|::.:.:||:||.|||||||||:|:.....:|.......|::
 Frog    21 KMFIGGLSWQTTQEGLREYFSHFGDVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHEL 85

  Fly    90 DGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGK 154
            |.:|::||.|.||:.  .|......||:|||||..:...|.:::||:.||::....::.||.|.:
 Frog    86 DSKTIDPKVAFPRRA--QPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNR 148

  Fly   155 KRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKAIAKQDMDRQGGGGGR 205
            .|||.|:.|:..|.|:|:.....|.|.||.::.|||..|:.|...|...||
 Frog   149 HRGFGFVTFEGEDIVEKVCDIHFHEINNKMVECKKAQPKEVMSPTGSVRGR 199

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Hrb87F	NP_001163602.1	RRM1_hnRNPA_like	25..102	CDD:241022	33/76 (43%)
		RRM_SF	116..188	CDD:302621	26/71 (37%)
msi1	XP_012816886.1	RRM1_MSI1	20..96	CDD:241203	32/74 (43%)
		PABP-1234	<32..324	CDD:130689	64/170 (38%)
		RRM2_MSI	110..183	CDD:240769	26/72 (36%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910