DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hrb87F and CG7903

DIOPT Version :10

Sequence 1:NP_476806.2 Gene:Hrb87F / 48535 FlyBaseID:FBgn0004237 Length:385 Species:Drosophila melanogaster
Sequence 2:NP_651755.2 Gene:CG7903 / 43554 FlyBaseID:FBgn0039730 Length:384 Species:Drosophila melanogaster


Alignment Length:396 Identity:105/396 - (26%)
Similarity:142/396 - (35%) Gaps:137/396 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   113 TVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKT 177
            |..|:|||.|.....|| ||..|.::|.:|..::::        ..||:..::.|..:..|....
  Fly     3 TTAKVFVGSLPRCKPEE-LRRLFTNYGSVVECDVMN--------RCAFVHLENTDMAEAAIAALN 58

  Fly   178 HSI-KNKTLDVKKAIAKQDMDRQGGGGGRGGPRAGGR-GGQGDRGQGGG----------GWGGQN 230
            .:| |.:.:.|:....|..    .|||.||.|.:|.. |.:..:.||||          .:....
  Fly    59 GTIFKGQPIVVEAGRPKYG----PGGGSRGQPGSGDNPGRRPSQVQGGGADKRPHESNTNFKRNF 119

  Fly   231 RQNGGGNWGGAG---------------------------------------GGGGFGN---SGGN 253
            |:..||.:...|                                       .|.||.|   .||.
  Fly   120 REEVGGRFSNEGPRSSNSSAAKFGPVRNESNYRQQRSAPYSKGPPNNESSNQGQGFRNKFAGGGK 184

  Fly   254 FGGGQGG----GSGGWNQQGGSGGGPW--NNQGGGNGGWNGGGGGG-YGGGNSNGSWGGNGGGGG 311
            |||..|.    ||..:.|:..||..|.  |.:.....|:.|||... :.||:|:...||:.....
  Fly   185 FGGSAGNEGRFGSNRFQQRDNSGPQPGRRNFKNSPTSGYRGGGNNSDFQGGSSSSGGGGSVNQRA 249

  Fly   312 GGGGFGN--------------EYQQS------YGGGPQRNSNFGNN--RPAPYSQG---GGGGGF 351
            ||||.|.              |:||.      :|.||..:.|.|.|  .| |..:|   ||||||
  Fly   250 GGGGPGPSHVRQDRRGFALPVEHQQQQMGFGRFGNGPMNSGNRGTNGGNP-PGGRGFFNGGGGGF 313

  Fly   352 N---------KGNQGGGQ---GFAGNNYN---------------TGGGGQG----------GNMG 379
            |         ...|||..   |..|.|:|               :||||.|          |...
  Fly   314 NDRRDSSHETSSPQGGPSKRGGSGGRNHNQNGINAYHSEFPPLGSGGGGPGQRNRFNGPRPGPNM 378

  Fly   380 GGNRRY 385
            |||||:
  Fly   379 GGNRRF 384

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb87FNP_476806.2 RRM1_hnRNPA_like 25..102 CDD:409992
RRM_SF 116..188 CDD:473069 18/72 (25%)
CG7903NP_651755.2 RRM_SF 6..70 CDD:473069 18/72 (25%)
PABP-1234 <18..173 CDD:130689 31/167 (19%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.