Protein Alignment Hrb87F and sqd

DIOPT Version :9

• Sequence 1: NP_001163602.1
• Gene: Hrb87F / 48535
• FlyBaseID: FBgn0004237
• Length: 385
• Species: Drosophila melanogaster
• Sequence 2: NP_731825.1
• Gene: sqd / 41666
• FlyBaseID: FBgn0263396
• Length: 344
• Species: Drosophila melanogaster
• Alignment Length: 360
• Identity: 138/360 - (38%)
• Similarity: 176/360 - (48%)
• Gaps: 70/360 - (19%)

  Fly     4 QNDSNGNYDDGEEITEPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFG 68
            |:.::|..||.         ||||:|||.:.||:..|:.||.|:|.|..:.|..||:|.|||||.
  Fly    45 QSAASGQRDDD---------RKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFA 100

  Fly    69 FITYSQSYMIDNAQNARPHKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLRE 133
            ||.::.:..||....|..|.|:.:.|:||:|..|.           .|:|||||..:..:|.::.
  Fly   101 FIVFTNTEAIDKVSAADEHIINSKKVDPKKAKARH-----------GKIFVGGLTTEISDEEIKT 154

  Fly   134 YFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKAIAKQDMDR 198
            ||..||.||.|.:..||...:::||.||.||....|..::......|..|.:|||:|..|.  :.
  Fly   155 YFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTPKQKIAGKEVDVKRATPKP--EN 217

  Fly   199 QGGGGGRGGPRAGGRGGQGDRGQGGGGWGGQNRQNGGGNWGGAGGGGGFGNSGGNFGGGQGGGSG 263
            |..||.|||||.|.|||:|    |.||.||.|.|     |.|.|..||:   ||.:||...||.|
  Fly   218 QMMGGMRGGPRGGMRGGRG----GYGGRGGYNNQ-----WDGQGSYGGY---GGGYGGYGAGGYG 270

  Fly   264 GWNQQGGSGGGPWNNQGGGNGGWNGGGGGGYGGGNSNGSWGGNGGGGGGGGGFGNEYQQSYGGGP 328
            .:     ..||.:|....|..|:      |||||     :.|||.||||||
  Fly   271 DY-----YAGGYYNGYDYGYDGY------GYGGG-----FEGNGYGGGGGG-------------- 305

  Fly   329 QRNSNFGNNRPAPYSQGG--GGGGFNKGNQGGGQG 361
                |.|..|..|...||  ||||||.|.|.||.|
  Fly   306 ----NMGGGRGGPRGGGGPKGGGGFNGGKQRGGGG 336

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Hrb87F	NP_001163602.1	RRM1_hnRNPA_like	25..102	CDD:241022	34/76 (45%)
		RRM_SF	116..188	CDD:302621	26/71 (37%)
sqd	NP_731825.1	RRM_SF	58..129	CDD:302621	30/70 (43%)
		RRM2_hnRNPD_like	137..211	CDD:240775	28/73 (38%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45463963
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	114	1.000	Inparanoid score	I1542
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	3	2.890