Protein Alignment Hrb87F and tardbp

DIOPT Version :9

• Sequence 1: NP_001163602.1
• Gene: Hrb87F / 48535
• FlyBaseID: FBgn0004237
• Length: 385
• Species: Drosophila melanogaster
• Sequence 2: XP_012821726.1
• Gene: tardbp / 394651
• XenbaseID: XB-GENE-974453
• Length: 418
• Species: Xenopus tropicalis
• Alignment Length: 320
• Identity: 101/320 - (31%)
• Similarity: 142/320 - (44%)
• Gaps: 39/320 - (12%)

  Fly    26 LFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNARPHKID 90
            |.:.||.::||:..||.:|..:|.::.|.|.||.||..|:||||:.:: .|.......::.|.||
 Frog   116 LIVLGLPWKTTEQDLKDYFSTFGEVIMVQVKKDAKTGHSKGFGFVRFA-DYETQVKVMSQRHMID 179

  Fly    91 GRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKK 155
            ||..:.|  :|..:  ||:.....:|:|||...:|...|.||::|..:|::|.|.|..     ..
 Frog   180 GRWCDCK--LPNSK--SPDEPMRSRKVFVGRCTEDMSAEELRQFFSQYGEVVDVFIPK-----PF 235

  Fly   156 RGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKAIAKQDMDRQGGGGGR-GGPRAGGRGGQGDR 219
            |.|||:.|.| |.|.:.:..:...||..::.|..|..|.:.:||...||| .||..|.:|....|
 Frog   236 RAFAFVTFAD-DQVAQSLCGEDLIIKGVSVHVSTAEPKHNNNRQLERGGRFPGPSFGNQGYPNSR 299

  Fly   220 GQGGGGWGGQNRQNGGGNWGGAGG--GGGFGNSGGNFGGGQGGGSGGW----------NQQGGSG 272
             ...|..|    .|.|||.||.||  .|.|..:.......|......|          ||.|..|
 Frog   300 -PSSGALG----NNQGGNMGGGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQNQSGPQG 359

  Fly   273 GGPWNNQGGGN----GGWNGGGGGGYGGGNSNGSWGGNGGGGGGG--GGFGNEYQQSYGG 326
                :|||.||    ...:.|....||..:....||....|.|.|  |||.:..:....|
 Frog   360 ----SNQGQGNQQRDQPQSFGSNNSYGSNSGAIGWGSPNAGSGSGFNGGFSSSMESKSSG 415

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Hrb87F	NP_001163602.1	RRM1_hnRNPA_like	25..102	CDD:241022	27/75 (36%)
		RRM_SF	116..188	CDD:302621	23/71 (32%)
tardbp	XP_012821726.1	RRM	<87..232	CDD:223796	42/120 (35%)
		RRM1_TDP43	115..191	CDD:240767	28/77 (36%)
		RRM	<190..>299	CDD:223796	37/116 (32%)
		RRM2_TDP43	200..270	CDD:240768	24/75 (32%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910