DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb87F and hnrnpa1b

DIOPT Version :9

Sequence 1:NP_001163602.1 Gene:Hrb87F / 48535 FlyBaseID:FBgn0004237 Length:385 Species:Drosophila melanogaster
Sequence 2:NP_956398.1 Gene:hnrnpa1b / 378453 ZFINID:ZDB-GENE-030912-14 Length:422 Species:Danio rerio


Alignment Length:411 Identity:206/411 - (50%)
Similarity:251/411 - (61%) Gaps:60/411 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 EPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQN 83
            |||||||||||||.:.||||.|:||||:||.:.|.||||||.|||||||||:|||....::.:.:
Zfish    28 EPEQLRKLFIGGLSFETTDDSLRAHFEQWGTLTDCVVMKDPNTKRSRGFGFVTYSSVDEVNASMD 92

  Fly    84 ARPHKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVS 148
            |||||:|||.|||||||.|::...|.|..||||:||||::||.:|..||:||..||:|..|.|:.
Zfish    93 ARPHKVDGRLVEPKRAVSREDSSKPFAHTTVKKIFVGGIKDDTEENHLRDYFDQFGKIEVVEIMV 157

  Fly   149 DKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKAIAKQDMDRQG------------- 200
            |..||.||||||:.|||:|.||:|::||.|::.....:|:||::||:|...|             
Zfish   158 DHKTGNKRGFAFVTFDDHDSVDRIVIQKYHTVNGHNCEVRKALSKQEMANTGRGGGGGGGGGGGN 222

  Fly   201 --------------GGGGRGGPRAG--GRGGQGDR---GQGGGGWGG----QNRQN--GGGNWGG 240
                          ||||.||.|.|  ||||:|:.   |.||||:||    .|..|  |||.:||
Zfish   223 FNRYGNNGGYNNDFGGGGGGGNRDGYFGRGGRGNNFGGGGGGGGYGGGGDCYNNNNGFGGGGYGG 287

  Fly   241 AGGGGGF--GNSGGN--FGGGQGGGSGGWNQQGGSGGGPWNNQGGGNGGWN--GGGGGGYGGGNS 299
            .||.||.  ||.|||  :|||.|||.|..||.||.|||   |.|||.||:|  ..|.|.:|||| 
Zfish   288 GGGNGGGSPGNYGGNRGYGGGGGGGHGYGNQGGGYGGG---NSGGGGGGYNNYNNGNGNFGGGN- 348

  Fly   300 NGSWGGNGGGGGGGGGFGNEYQQSYGGGPQRNSNFGNNRPAPYSQGGGGGGFNKGNQGGGQGFAG 364
               :||.|||||..||.||  ...:|....:.||:|     |.....||||.|.|..|||.|  |
Zfish   349 ---FGGGGGGGGNSGGGGN--YNDFGNYNSQQSNYG-----PMKGNFGGGGRNSGPYGGGYG--G 401

  Fly   365 NNYNTGGGGQGGNMGGGNRRY 385
            .:..:||||.|...|.|.||:
Zfish   402 GSSGSGGGGSGYGGGSGGRRF 422

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb87FNP_001163602.1 RRM1_hnRNPA_like 25..102 CDD:241022 52/76 (68%)
RRM_SF 116..188 CDD:302621 36/71 (51%)
hnrnpa1bNP_956398.1 RRM <19..187 CDD:223796 99/158 (63%)
RRM_SF 31..111 CDD:302621 55/79 (70%)
RRM2_hnRNPA1 124..200 CDD:241024 39/75 (52%)
HnRNPA1 367..>387 CDD:288479 5/24 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 101 1.000 Domainoid score I6875
eggNOG 1 0.900 - - E33208_3BA81
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 387 1.000 Inparanoid score I1965
OMA 1 1.010 - - QHG46466
OrthoDB 1 1.010 - - D1202220at2759
OrthoFinder 1 1.000 - - FOG0000779
OrthoInspector 1 1.000 - - mtm6517
orthoMCL 1 0.900 - - OOG6_103644
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X431
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1211.740

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