Protein Alignment Hrb87F and Msi2

DIOPT Version :9

• Sequence 1: NP_001163602.1
• Gene: Hrb87F / 48535
• FlyBaseID: FBgn0004237
• Length: 385
• Species: Drosophila melanogaster
• Sequence 2: XP_038943587.1
• Gene: Msi2 / 360596
• RGDID: 1560397
• Length: 354
• Species: Rattus norvegicus
• Alignment Length: 364
• Identity: 113/364 - (31%)
• Similarity: 162/364 - (44%)
• Gaps: 61/364 - (16%)

  Fly     5 NDSNGNYDDGEEITEPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGF 69
            |||  .:|.|          |:|||||.::|:.|.|:.:|.|:|.|.:.:||:||.|||||||||
  Rat    14 NDS--QHDPG----------KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGF 66

  Fly    70 ITYSQSYMIDNAQNARPHKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREY 134
            :|::....:|.......|::|.:|::||.|.||:.  .|......||:|||||..:...|.:::|
  Rat    67 VTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRA--QPKMVTRTKKIFVGGLSANTVVEDVKQY 129

  Fly   135 FKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKAIAKQDMDRQ 199
            |:.||::....::.||.|.:.|||.|:.|::.|.|:|:.....|.|.||.::.|||..|:.|...
  Rat   130 FEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVMFPP 194

  Fly   200 GGGGGRGGPRAGGRGGQGDRGQGGGGWGGQNRQNGGGNWGGAGGGG--GFGNSGG---------- 252
            |..|     ||.|.....|....|.|      ..|..|:....|.|  ||..|.|
  Rat   195 GTRG-----RARGLPYTMDAFMLGMG------MLGYPNFVATYGRGYPGFAPSYGYQFPALLPYL 248

  Fly   253 --NF-------------GGGQGGGSGGWNQQGGSGGGPWNNQGGGNGGWNGGGGGGYGGGNSNGS 302
              :|             ...:|.....::.| .:.|.|.:..|.     |....||:.|.||.|.
  Rat   249 NASFPAAAYGPVAAAAVAAARGSVLNSYSAQ-PNFGAPTSPAGS-----NPARPGGFPGANSPGP 307

  Fly   303 WGGNGGGGGGGGGFGNEYQQSYGGGPQRNSNFGNNRPAP 341
            .....|......|.||...   ...||..|.||:....|
  Rat   308 VADLYGPASQDSGVGNYIS---AASPQPGSGFGHGIAGP 343

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Hrb87F	NP_001163602.1	RRM1_hnRNPA_like	25..102	CDD:241022	34/76 (45%)
		RRM_SF	116..188	CDD:302621	26/71 (37%)
Msi2	XP_038943587.1	RRM1_MSI2	17..109	CDD:410153	39/103 (38%)
		PABP-1234	<35..351	CDD:130689	101/331 (31%)
		RRM2_MSI	111..184	CDD:240769	26/72 (36%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910