DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb87F and hnrnpaba

DIOPT Version :9

Sequence 1:NP_001163602.1 Gene:Hrb87F / 48535 FlyBaseID:FBgn0004237 Length:385 Species:Drosophila melanogaster
Sequence 2:NP_997752.2 Gene:hnrnpaba / 321466 ZFINID:ZDB-GENE-030131-185 Length:340 Species:Danio rerio


Alignment Length:340 Identity:116/340 - (34%)
Similarity:169/340 - (49%) Gaps:68/340 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 DGEEITE---PEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQ 74
            ||.:|..   .|...|:|:|||.:.|:...||.:|.|:|.:.|..:..||.|.||||||||.:.:
Zfish    55 DGGQIDASKGEEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFKE 119

  Fly    75 SYMIDNAQNARPHKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFG 139
            ...:|.....:.|::|||.::||:|:..::       ..|||:|||||..:..||.:||||..||
Zfish   120 PSGVDKVLAQKEHRLDGRQIDPKKAMAMKK-------EPVKKIFVGGLNPETTEERIREYFGAFG 177

  Fly   140 QIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSI--------KNKTLDVKKAIAKQDM 196
            :|.::.:..|..:.|:|||.||.|.:.:.|.||:.:|.|::        |....::|.|..|:..
Zfish   178 EIETIELPMDPKSNKRRGFVFITFKEEEAVKKILEKKYHNVSGTKDTSGKEGLCEIKIAQPKEVY 242

  Fly   197 DRQGGGGGRGGPRAGGRGGQGDRGQGGGGWGGQNRQNGGGNWGGAGGGGGFGNSGGNFGGGQGGG 261
            .:|..||..||   ||||    ||:||.|      ||                            
Zfish   243 QQQQYGGRFGG---GGRG----RGRGGQG------QN---------------------------- 266

  Fly   262 SGGWNQQGGSGGGPWNNQGGGNGGWNG-GGGGGYGGGNSNGSWGGNGGGGGGGGGFG-NEYQQSY 324
               |||    |...:.|||.||.|:.| ||..||||....|::..:||..||.||:. |:...||
Zfish   267 ---WNQ----GYNNYWNQGYGNQGYGGYGGQQGYGGYGGYGNYDYSGGYYGGYGGYDYNQGNTSY 324

  Fly   325 GGGPQRNSNFGNNRP 339
            |..|:|.::..:.:|
Zfish   325 GKTPRRGAHQSSYKP 339

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb87FNP_001163602.1 RRM1_hnRNPA_like 25..102 CDD:241022 31/76 (41%)
RRM_SF 116..188 CDD:302621 29/79 (37%)
hnrnpabaNP_997752.2 CBFNT 1..69 CDD:285369 4/13 (31%)
RRM1_hnRNPAB 70..144 CDD:241201 30/73 (41%)
RRM2_hnRNPAB 149..228 CDD:241028 30/85 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1202220at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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