DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb87F and Pabpn1l

DIOPT Version :10

Sequence 1:NP_476806.2 Gene:Hrb87F / 48535 FlyBaseID:FBgn0004237 Length:385 Species:Drosophila melanogaster
Sequence 2:NP_001107251.1 Gene:Pabpn1l / 307920 RGDID:1562761 Length:269 Species:Rattus norvegicus


Alignment Length:168 Identity:39/168 - (23%)
Similarity:62/168 - (36%) Gaps:36/168 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 PHKIDGRTVEPKRAVPRQEIDSP-------------NAGATVKKLFVGGLRDDHDEECLREYFKD 137
            |..:..:..|.:||..| |:.||             |..|..:.::||.:........|..||..
  Rat    98 PPSVQRKATEEERAEAR-ELLSPETIGCFFPGAPKENVEADHRSVYVGNVDYGGSAAELEAYFSP 161

  Fly   138 FGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKAIAKQ-------D 195
            .|:|..|.|:.||.:|..:|:|:|||.....|...:.....:.:.:.:   |.:.|:       .
  Rat   162 CGEIHRVTILCDKFSGHPKGYAYIEFASKSSVQAAVRLDESTFRGRVI---KVLPKRTNFPGISS 223

  Fly   196 MDRQG------------GGGGRGGPRAGGRGGQGDRGQ 221
            .||.|            .|..:..||....|....||:
  Rat   224 TDRGGLRTHSSSRAAFLQGSLQRKPRLRPHGQSRGRGR 261

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb87FNP_476806.2 RRM1_hnRNPA_like 25..102 CDD:409992 4/15 (27%)
RRM_SF 116..188 CDD:473069 18/71 (25%)
Pabpn1lNP_001107251.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 26..54
RRM_SF 140..216 CDD:473069 20/78 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 240..269 6/22 (27%)
Blue background indicates that the domain is not in the aligned region.

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