DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Hrb87F and Hnrnpa1

DIOPT Version :9

Sequence 1:NP_001163602.1 Gene:Hrb87F / 48535 FlyBaseID:FBgn0004237 Length:385 Species:Drosophila melanogaster
Sequence 2:XP_006242446.1 Gene:Hnrnpa1 / 29578 RGDID:69234 Length:373 Species:Rattus norvegicus


Alignment Length:392 Identity:195/392 - (49%)
Similarity:246/392 - (62%) Gaps:47/392 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 EEITEPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMID 79
            |...|||||||||||||.:.|||:.|::|||:||.:.|.|||:||.|||||||||:||:....:|
  Rat     5 ESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVD 69

  Fly    80 NAQNARPHKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSV 144
            .|.||||||:|||.|||||||.|::...|.|..||||:||||:::|.:|..||:||:.:|:|..:
  Rat    70 AAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 134

  Fly   145 NIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKAIAKQDM-----DRQG--GG 202
            .|::|:.:||||||||:.|||:|.||||::||.|::.....:|:||::||:|     .::|  |.
  Rat   135 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGS 199

  Fly   203 GGRGGPRAGGRGGQGDRGQGG-----GGWGGQNRQNGGGNWGGAGGG-GGFGNSGGNFGGGQG-- 259
            |..||.|.||.||..:.|:||     ||:||   ..|||.:||:|.| .||||.||..|||.|  
  Rat   200 GNFGGGRGGGFGGNDNFGRGGNFSGRGGFGG---SRGGGGYGGSGDGYNGFGNDGGYGGGGPGYS 261

  Fly   260 GGSGGWNQQGGSGGGPWNNQGGGNGGW-------NGGGGGGYGGGNSNGSWGGNGGGGGGGGGFG 317
            |||.|:    ||||..:.|||.|.||.       |||||||:|||:     |.|.||||....||
  Rat   262 GGSRGY----GSGGQGYGNQGSGYGGSGSYDSYNNGGGGGGFGGGS-----GSNFGGGGSYNDFG 317

  Fly   318 NEYQQSYGGGPQRNSNFGNNRPAPYSQGGGGGGFNK-GNQGGGQGFAGNNYNTGGGGQGGNMGGG 381
            |...||...||.:..|||.....||  ||||..|.| .||||          .||.....:.|.|
  Rat   318 NYNNQSSNFGPMKGGNFGGRSSGPY--GGGGQYFAKPRNQGG----------YGGSSSSSSYGSG 370

  Fly   382 NR 383
            .|
  Rat   371 RR 372

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb87FNP_001163602.1 RRM1_hnRNPA_like 25..102 CDD:241022 51/76 (67%)
RRM_SF 116..188 CDD:302621 34/71 (48%)
Hnrnpa1XP_006242446.1 RRM1_hnRNPA1 12..92 CDD:410154 54/79 (68%)
RRM2_hnRNPA3 105..184 CDD:409996 38/78 (49%)
HnRNPA1 308..345 CDD:402981 17/38 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 102 1.000 Domainoid score I6662
eggNOG 1 0.900 - - E33208_3BA81
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 348 1.000 Inparanoid score I2227
OMA 1 1.010 - - QHG46466
OrthoDB 1 1.010 - - D1202220at2759
OrthoFinder 1 1.000 - - FOG0000779
OrthoInspector 1 1.000 - - mtm8985
orthoMCL 1 0.900 - - OOG6_103644
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X431
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1211.780

Return to query results.
Submit another query.