DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb87F and AT5G59865

DIOPT Version :9

Sequence 1:NP_001163602.1 Gene:Hrb87F / 48535 FlyBaseID:FBgn0004237 Length:385 Species:Drosophila melanogaster
Sequence 2:NP_001331799.1 Gene:AT5G59865 / 28721278 AraportID:AT5G59865 Length:113 Species:Arabidopsis thaliana


Alignment Length:99 Identity:33/99 - (33%)
Similarity:56/99 - (56%) Gaps:12/99 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 ITEPEQLR---------KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITY 72
            ||.|  ||         |||:|||.|.|.:..||..|||:|.|::|.|:.|.|:.:|:|:||:.:
plant    12 ITSP--LRCFAIRGSCSKLFVGGLSYDTNEPVLKNEFEKYGEIIEVKVICDHKSGKSKGYGFVLF 74

  Fly    73 SQSYMIDNAQNARPHK-IDGRTVEPKRAVPRQEI 105
            .......:|..:..:: ::||.:..:.|.|::.:
plant    75 DSEEAAASALASMDNQLLEGRNIRVEYAQPKRSL 108

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb87FNP_001163602.1 RRM1_hnRNPA_like 25..102 CDD:241022 27/77 (35%)
RRM_SF 116..188 CDD:302621
AT5G59865NP_001331799.1 RRM_SF 27..102 CDD:418427 26/74 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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