DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb87F and gar2

DIOPT Version :10

Sequence 1:NP_476806.2 Gene:Hrb87F / 48535 FlyBaseID:FBgn0004237 Length:385 Species:Drosophila melanogaster
Sequence 2:NP_593531.1 Gene:gar2 / 2542869 PomBaseID:SPAC140.02 Length:500 Species:Schizosaccharomyces pombe


Alignment Length:318 Identity:90/318 - (28%)
Similarity:129/318 - (40%) Gaps:85/318 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 AEQNDSNGNYD-DGEEITEPEQLRK------------------------LFIGGLDYRTTDDGLK 41
            :|..||:.:.| :.|..:|.|:.||                        :|:|.|.:...|..|.
pombe   216 SESGDSDSSSDSESESSSEDEKKRKAEPASEERPAKITKPSQDSNETCTVFVGRLSWNVDDQWLG 280

  Fly    42 AHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNARPHK-IDGRTVEPKRAVPRQEI 105
            ..||::|.||...|:.|.::.||:|:|::.:........|..|...| ||||.|....:.||...
pombe   281 QEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPAN 345

  Fly   106 DSP-------NAGATVKK----LFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFA 159
            ..|       |.|..:.:    :|||.|..:..|:.|...|...|.|.|:.:.:|..:|:.:||.
pombe   346 PQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFG 410

  Fly   160 FIEFDDYDPVDKIILQKTHSIKNK--TLDVKKAIAKQDMDRQGGGGGRGGPRAGGRGGQGDRGQG 222
            ::.|.|.|...|.:....|.|..:  .||...                  ||.||    |.|| |
pombe   411 YVTFSDIDSAKKCVEMNGHFIAGRPCRLDFST------------------PRTGG----GSRG-G 452

  Fly   223 GGGWGGQNRQNGGGNWGGAGGGGGFGNSGGNFGGGQGGGSGGWNQQGGSGGGPWNNQG 280
            .||:||:               ||||..|| ||||:|.|.|     |...|.|  |:|
pombe   453 RGGFGGR---------------GGFGGRGG-FGGGRGRGRG-----GARSGNP--NRG 487

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb87FNP_476806.2 RRM1_hnRNPA_like 25..102 CDD:409992 25/101 (25%)
RRM_SF 116..188 CDD:473069 22/77 (29%)
gar2NP_593531.1 PRK13808 <2..64 CDD:172341
RRM_SF 264..339 CDD:473069 24/74 (32%)
RRM2_gar2 368..439 CDD:409882 20/70 (29%)
Blue background indicates that the domain is not in the aligned region.

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