DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb87F and CSTF2T

DIOPT Version :10

Sequence 1:NP_476806.2 Gene:Hrb87F / 48535 FlyBaseID:FBgn0004237 Length:385 Species:Drosophila melanogaster
Sequence 2:NP_056050.1 Gene:CSTF2T / 23283 HGNCID:17086 Length:616 Species:Homo sapiens


Alignment Length:557 Identity:116/557 - (20%)
Similarity:174/557 - (31%) Gaps:212/557 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 LRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITY-SQSYMIDNAQNARP 86
            ||.:|:|.:.|..|::.||..|.:.|::|...::.|.:|.:.:|:||..| .|...:...:|...
Human    15 LRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNG 79

  Fly    87 HKIDGRTVEPKRAVPRQE-------------IDSP--------NAGATVKKLFVGGLRDDHDEE- 129
            .:..||.:....|...:.             ||||        :|..::.:. |..|..:...| 
Human    80 REFSGRALRVDNAASEKNKEELKSLGPAAPIIDSPYGDPIDPEDAPESITRA-VASLPPEQMFEL 143

  Fly   130 ------CLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFD------DYDPVDKIILQKTHSI-- 180
                  |::...::...::..|        .:..:|.::..      |.:...||:.:|.|..  
Human   144 MKQMKLCVQNSHQEARNMLLQN--------PQLAYALLQAQVVMRIMDPEIALKILHRKIHVTPL 200

  Fly   181 ---KNKTLDVK-----------------------KAIAKQDMDR--------------QGG---- 201
               |::::.|.                       .|...|.:.|              |||    
Human   201 IPGKSQSVSVSGPGPGPGPGLCPGPNVLLNQQNPPAPQPQHLARRPVKDIPPLMQTPIQGGIPAP 265

  Fly   202 --------GGGRGGPRAG-------GRGGQG----DRGQ-----------------GG----GGW 226
                    |.|.|....|       |..|.|    :|||                 ||    |..
Human   266 GPIPAAVPGAGPGSLTPGGAMQPQLGMPGVGPVPLERGQVQMSDPRAPIPRGPVTPGGLPPRGLL 330

  Fly   227 G-GQNRQNGG------------GNWGGAGGGGGFGNSGGNFGGG------QGGGSGGWNQQGGSG 272
            | ..|...||            |..|....|....::.|:...|      :||..|......|..
Human   331 GDAPNDPRGGTLLSVTGEVEPRGYLGPPHQGPPMHHASGHDTRGPSSHEMRGGPLGDPRLLIGEP 395

  Fly   273 GGPWNNQGG----GNGGWNGGG-----------------------------GGGYGGGNSNG--- 301
            .||..:|.|    |.||.:...                             |....|.::.|   
Human   396 RGPMIDQRGLPMDGRGGRDSRAMETRAMETEVLETRVMERRGMETCAMETRGMEARGMDARGLEM 460

  Fly   302 ------SWGGNGGGGGGGG----GFGNEYQQSYGGGPQR---NSNFGNNRPAPYSQGGG--GGGF 351
                  |.|...||..|.|    |.|...|     ||::   .|..||  |....||.|  |.|.
Human   461 RGPVPSSRGPMTGGIQGPGPINIGAGGPPQ-----GPRQVPGISGVGN--PGAGMQGTGIQGTGM 518

  Fly   352 -NKGNQGGGQ---GFAGNNYNTGGGGQGGNMGGGNRR 384
             ..|.||||.   |..|.:.. |||.|||.:.|.:::
Human   519 QGAGIQGGGMQGAGIQGVSIQ-GGGIQGGGIQGASKQ 554

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb87FNP_476806.2 RRM1_hnRNPA_like 25..102 CDD:409992 20/77 (26%)
RRM_SF 116..188 CDD:473069 12/89 (13%)
CSTF2TNP_056050.1 RRM_CSTF2_CSTF2T 10..94 CDD:410072 22/78 (28%)
CSTF2_hinge 112..191 CDD:433869 12/87 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 203..241 3/37 (8%)
PRK12323 <242..>387 CDD:481241 28/144 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 262..418 33/155 (21%)
9 X 5 AA tandem repeats of M-E-T-R-[AG] 418..462 3/43 (7%)
9 X 5 AA tandem repeats of G-[AT]-G-[MI]-Q 505..549 18/44 (41%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 542..573 5/13 (38%)
CSTF_C 572..612 CDD:464130
Blue background indicates that the domain is not in the aligned region.

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