DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb87F and PUF60

DIOPT Version :9

Sequence 1:NP_001163602.1 Gene:Hrb87F / 48535 FlyBaseID:FBgn0004237 Length:385 Species:Drosophila melanogaster
Sequence 2:NP_001349824.1 Gene:PUF60 / 22827 HGNCID:17042 Length:596 Species:Homo sapiens


Alignment Length:188 Identity:42/188 - (22%)
Similarity:77/188 - (40%) Gaps:35/188 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYS------------QSYM 77
            ::::|.:.|...:|.::..|..:|.|..:.:..|..|.:.:||.|:.|.            .|.|
Human   167 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVM 231

  Fly    78 ID--NAQNARPHKID------GRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREY 134
            :.  |.:..||..|.      .:..|..||..|              ::|..:..|..::.::..
Human   232 LGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNR--------------IYVASVHQDLSDDDIKSV 282

  Fly   135 FKDFGQIVSVNIVSDKDTGKKRGFAFIEFDD-YDPVDKIILQKTHSIKNKTLDVKKAI 191
            |:.||:|.|..:..|..|||.:|:.|||::. ....|.:.......:..:.|.|.||:
Human   283 FEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 340

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb87FNP_001163602.1 RRM1_hnRNPA_like 25..102 CDD:241022 21/96 (22%)
RRM_SF 116..188 CDD:302621 17/72 (24%)
PUF60NP_001349824.1 half-pint 44..596 CDD:130706 42/188 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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