DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb87F and sqd-1

DIOPT Version :9

Sequence 1:NP_001163602.1 Gene:Hrb87F / 48535 FlyBaseID:FBgn0004237 Length:385 Species:Drosophila melanogaster
Sequence 2:NP_001380080.1 Gene:sqd-1 / 177392 WormBaseID:WBGene00022235 Length:308 Species:Caenorhabditis elegans


Alignment Length:362 Identity:107/362 - (29%)
Similarity:144/362 - (39%) Gaps:80/362 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 AEQNDSNGN-----YDDGEEITEPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKT 61
            |..|..|||     .::|.. |:..:.:|:|:||:.....::.|.:||.::|.:....|..|...
 Worm     3 ATDNKINGNASETIKENGHS-TKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTN 66

  Fly    62 KRSRGFGFITYSQSYMIDNAQNARPHKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDH 126
            .|||||.|:.::.......|..||...|.|::||.|.|..|:.          ||:|||||..|:
 Worm    67 GRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVEVKPAKSREN----------KKVFVGGLPSDY 121

  Fly   127 DEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKAI 191
            .|:.||.:|:.||::..:....||.|..:|.||||.|::.:..||...|...:...:..|||||:
 Worm   122 SEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQTFGTRECDVKKAV 186

  Fly   192 AKQDMDRQGGGGGRGGPRAGGRGGQGDRGQGGGGWGGQNRQNGGGNWGGAGGGGGFGNSGGNFGG 256
            .                       ||.|                                  |.|
 Worm   187 P-----------------------QGKR----------------------------------FPG 194

  Fly   257 GQGGGSGGWNQQGGSGGGPWNNQGGGNGGWNGGGGGGYGG-GNSNGSWGGNGGGGGGGGGFGNEY 320
            .||...||....||.||   ||..|...||...|...||. |.:.|.|.|||..|..|....|..
 Worm   195 AQGRMPGGRGMYGGRGG---NNNSGWYAGWGQIGAMPYGATGAAWGDWYGNGYYGQQGAAHHNNS 256

  Fly   321 QQSYGGGPQRNSNFGNNRPAPYSQGGGGGGFNKGNQG 357
            ..|.|.|....|..|||....|.|..|.   .:||.|
 Worm   257 GSSQGYGSGYQSFAGNNSGFDYQQAQGA---RQGNNG 290

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb87FNP_001163602.1 RRM1_hnRNPA_like 25..102 CDD:241022 25/76 (33%)
RRM_SF 116..188 CDD:302621 26/71 (37%)
sqd-1NP_001380080.1 RRM2_NsCP33_like 30..104 CDD:410187 24/73 (33%)
RRM_SF 111..185 CDD:418427 28/73 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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