DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb87F and sqd-1

DIOPT Version :10

Sequence 1:NP_476806.2 Gene:Hrb87F / 48535 FlyBaseID:FBgn0004237 Length:385 Species:Drosophila melanogaster
Sequence 2:NP_001380080.1 Gene:sqd-1 / 177392 WormBaseID:WBGene00022235 Length:308 Species:Caenorhabditis elegans


Alignment Length:362 Identity:107/362 - (29%)
Similarity:144/362 - (39%) Gaps:80/362 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 AEQNDSNGN-----YDDGEEITEPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKT 61
            |..|..|||     .::|.. |:..:.:|:|:||:.....::.|.:||.::|.:....|..|...
 Worm     3 ATDNKINGNASETIKENGHS-TKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTN 66

  Fly    62 KRSRGFGFITYSQSYMIDNAQNARPHKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDH 126
            .|||||.|:.::.......|..||...|.|::||.|.|..|:.          ||:|||||..|:
 Worm    67 GRSRGFAFVEFTTGEGCKLALAAREQTIKGKSVEVKPAKSREN----------KKVFVGGLPSDY 121

  Fly   127 DEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKAI 191
            .|:.||.:|:.||::..:....||.|..:|.||||.|::.:..||...|...:...:..|||||:
 Worm   122 SEQDLRSHFEQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKASSQTKQTFGTRECDVKKAV 186

  Fly   192 AKQDMDRQGGGGGRGGPRAGGRGGQGDRGQGGGGWGGQNRQNGGGNWGGAGGGGGFGNSGGNFGG 256
            .                       ||.|                                  |.|
 Worm   187 P-----------------------QGKR----------------------------------FPG 194

  Fly   257 GQGGGSGGWNQQGGSGGGPWNNQGGGNGGWNGGGGGGYGG-GNSNGSWGGNGGGGGGGGGFGNEY 320
            .||...||....||.||   ||..|...||...|...||. |.:.|.|.|||..|..|....|..
 Worm   195 AQGRMPGGRGMYGGRGG---NNNSGWYAGWGQIGAMPYGATGAAWGDWYGNGYYGQQGAAHHNNS 256

  Fly   321 QQSYGGGPQRNSNFGNNRPAPYSQGGGGGGFNKGNQG 357
            ..|.|.|....|..|||....|.|..|.   .:||.|
 Worm   257 GSSQGYGSGYQSFAGNNSGFDYQQAQGA---RQGNNG 290

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb87FNP_476806.2 RRM1_hnRNPA_like 25..102 CDD:409992 25/76 (33%)
RRM_SF 116..188 CDD:473069 26/71 (37%)
sqd-1NP_001380080.1 RRM2_NsCP33_like 30..104 CDD:410187 24/73 (33%)
RRM_SF 111..185 CDD:473069 28/73 (38%)

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