DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb87F and EEED8.4

DIOPT Version :10

Sequence 1:NP_476806.2 Gene:Hrb87F / 48535 FlyBaseID:FBgn0004237 Length:385 Species:Drosophila melanogaster
Sequence 2:NP_495022.2 Gene:EEED8.4 / 173921 WormBaseID:WBGene00017135 Length:191 Species:Caenorhabditis elegans


Alignment Length:140 Identity:26/140 - (18%)
Similarity:46/140 - (32%) Gaps:26/140 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   530 SLSKPLEQPSSSKAASSGNESMS-----DHISRIISENEVILQGDPVIRKKRPYHRQIGAQSSVD 589
            |.|.....||....|.:..|...     ..:|..::|.:::.|        .|:.....:.|.::
 Worm     2 SFSDDCTSPSEKNRARTSQEPRERPQDLSFLSSKVTEKQIMSQ--------EPFETSCSSVSPMN 58

  Fly   590 HDSNSGGSTRTSPGPKDSRMLQAASRSQSLFELSGSKHFMGSLTSGQPLLRPIQAHNDPNYTPEC 654
            .|..:..| |..|..|:....::...:.:...|....||.|. :.|...|           :.|.
 Worm    59 RDKEAFNS-RHGPFSKNQNYFESNDITMNTENLLNPFHFGGG-SCGCAFL-----------STES 110

  Fly   655 IYCKLTFPNE 664
            :.|..|...|
 Worm   111 MLCSFTVSGE 120

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb87FNP_476806.2 RRM1_hnRNPA_like 25..102 CDD:409992
RRM_SF 116..188 CDD:473069
EEED8.4NP_495022.2 RRM_II_PABPs 56..128 CDD:409747 15/78 (19%)
Blue background indicates that the domain is not in the aligned region.

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