DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb87F and Hnrnpab

DIOPT Version :9

Sequence 1:NP_001163602.1 Gene:Hrb87F / 48535 FlyBaseID:FBgn0004237 Length:385 Species:Drosophila melanogaster
Sequence 2:NP_001041526.1 Gene:Hnrnpab / 15384 MGIID:1330294 Length:332 Species:Mus musculus


Alignment Length:339 Identity:112/339 - (33%)
Similarity:163/339 - (48%) Gaps:70/339 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 NGNYDDGEEIT---EPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGF 69
            |.|..:|::|.   ..|...|:|:|||.:.|:...||.:|.|:|.:||..:..||.|.|||||||
Mouse    56 NQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGF 120

  Fly    70 ITYSQSYMIDNAQNARPHKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREY 134
            |.:..|..::...:.:.|::|||.::||:|:..::  .|     |||:|||||..:..||.:|||
Mouse   121 ILFKDSSSVEKVLDQKEHRLDGRVIDPKKAMAMKK--DP-----VKKIFVGGLNPEATEEKIREY 178

  Fly   135 FKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKAIAKQ-DMDR 198
            |..||:|.::.:..|....|:|||.||.|.:.|||.|::.:|.|::.....::|.|..|: ...:
Mouse   179 FGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEKKFHTVSGSKCEIKVAQPKEVYQQQ 243

  Fly   199 QGGGGGRGGPRAGGRGGQGDRGQGGGGWGGQNRQNGGGNWGGAGGGGGFGNSGGNFGGGQGGGSG 263
            |.|.||||....|.||.                                       ||||   |.
Mouse   244 QYGSGGRGNRNRGNRGS---------------------------------------GGGQ---SQ 266

  Fly   264 GWNQQGGSGGGPWNNQGGGNGGWNGGGGGGYGGGNSNGSWGGNGGGGGGGGGFGNEYQQ---SYG 325
            .|||    |.|.:.|||   .|:..|.|.||||.:.:..       |..|.|.|.:|.|   :||
Mouse   267 SWNQ----GYGNYWNQG---YGYQQGYGPGYGGYDYSPY-------GYYGYGPGYDYSQGSTNYG 317

  Fly   326 GGPQRNSNFGNNRP 339
            ...:|..:..|.:|
Mouse   318 KSQRRGGHQNNYKP 331

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb87FNP_001163602.1 RRM1_hnRNPA_like 25..102 CDD:241022 32/76 (42%)
RRM_SF 116..188 CDD:302621 29/71 (41%)
HnrnpabNP_001041526.1 CBFNT 1..75 CDD:285369 5/18 (28%)
RRM1_hnRNPAB 76..150 CDD:241201 31/73 (42%)
RRM2_hnRNPAB 155..234 CDD:241028 33/85 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1202220at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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