DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb87F and HNRNPA1L2

DIOPT Version :9

Sequence 1:NP_001163602.1 Gene:Hrb87F / 48535 FlyBaseID:FBgn0004237 Length:385 Species:Drosophila melanogaster
Sequence 2:NP_001011724.1 Gene:HNRNPA1L2 / 144983 HGNCID:27067 Length:320 Species:Homo sapiens


Alignment Length:355 Identity:165/355 - (46%)
Similarity:214/355 - (60%) Gaps:47/355 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 EPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQN 83
            |||||||||||||.:.|||:.|::|||:||.:.|.|||:||.|||||||||:||:....:|.|.|
Human     9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73

  Fly    84 ARPHKIDGRTVEPKRAVPRQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVS 148
            ..|||:|||.|||||||.|::...|.|..||||:||||:::|.:|..||:||:.:|:|..:.|::
Human    74 TTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMT 138

  Fly   149 DKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKAIAKQDMDRQGGGGGRGGPRAGGR 213
            |:.:||||||||:.|||:|.||||::||.|::|....:|:||:.||:|               ..
Human   139 DRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEM---------------AS 188

  Fly   214 GGQGDRGQGGGGWGGQNRQNGGGNWGGAGGGGGFGNSGGNFG-GGQGGGSGGWNQQGGSGGGPWN 277
            .....||           :.|.||:|| |.|.|||.: .||| ||...|.||:   |||.||   
Human   189 ASSSQRG-----------RRGSGNFGG-GRGDGFGGN-DNFGRGGNFSGRGGF---GGSCGG--- 234

  Fly   278 NQGGGNGGWNGGGGGGYGGGNSNGSWGGNGGGGGGGGGFGNEYQQSYGGGPQRNSNFGNNRPAPY 342
                  ||: ||.|.||.|..::||   |.||||....|||...||...||.:..|||.....||
Human   235 ------GGY-GGSGDGYNGFGNDGS---NFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSSGPY 289

  Fly   343 SQGGGGGGFNKGNQGGGQGFAGNNYNTGGG 372
              ||||..|.|....||.|.:.::.:.|.|
Human   290 --GGGGQYFAKPQNQGGYGVSSSSSSYGSG 317

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb87FNP_001163602.1 RRM1_hnRNPA_like 25..102 CDD:241022 49/76 (64%)
RRM_SF 116..188 CDD:302621 35/71 (49%)
HNRNPA1L2NP_001011724.1 Globular A domain 4..94 56/84 (67%)
RRM1_hnRNPA1 12..92 CDD:410154 52/79 (66%)
Globular B domain 95..185 44/89 (49%)
RRM_SF 105..184 CDD:418427 39/78 (50%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 181..216 15/62 (24%)
RNA-binding RGG-box 218..240 13/34 (38%)
HnRNPA1 255..292 CDD:402981 17/38 (45%)
Nuclear targeting sequence. /evidence=ECO:0000250 268..305 16/38 (42%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 271..320 18/49 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 102 1.000 Domainoid score I6828
eggNOG 1 0.900 - - E33208_3BA81
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 360 1.000 Inparanoid score I2209
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG46466
OrthoDB 1 1.010 - - D1202220at2759
OrthoFinder 1 1.000 - - FOG0000779
OrthoInspector 1 1.000 - - otm40611
orthoMCL 1 0.900 - - OOG6_103644
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X431
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
1110.780

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