DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb87F and Dazl

DIOPT Version :9

Sequence 1:NP_001163602.1 Gene:Hrb87F / 48535 FlyBaseID:FBgn0004237 Length:385 Species:Drosophila melanogaster
Sequence 2:XP_006523646.1 Gene:Dazl / 13164 MGIID:1342328 Length:408 Species:Mus musculus


Alignment Length:126 Identity:37/126 - (29%)
Similarity:63/126 - (50%) Gaps:19/126 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 PHKIDGRTVE-PKRAVPRQEIDSPNAGATVKK-------------LFVGGLRDDHDEECLREYFK 136
            |.::...|.| |..||.| |..:.::.||..:             :||||:....||..:|.:|.
Mouse   108 PCRLSATTSEAPNSAVSR-EASTQSSSATTSQGYVLPEGKIMPNTVFVGGIDVRMDETEIRSFFA 171

  Fly   137 DFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVD-KIILQKTHSIKNKTLDVKKAIAKQDM 196
            .:|.:..|.|::|: ||..:|:.|:.|  |:.|| :.|::...:...|.|.:..||.||::
Mouse   172 RYGSVKEVKIITDR-TGVSKGYGFVSF--YNDVDVQKIVESQINFHGKKLKLGPAIRKQNL 229

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb87FNP_001163602.1 RRM1_hnRNPA_like 25..102 CDD:241022 6/16 (38%)
RRM_SF 116..188 CDD:302621 23/85 (27%)
DazlXP_006523646.1 RRM_DAZL 145..226 CDD:241116 25/83 (30%)
PABP-1234 <150..318 CDD:130689 27/83 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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