DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb87F and msi

DIOPT Version :10

Sequence 1:NP_476806.2 Gene:Hrb87F / 48535 FlyBaseID:FBgn0004237 Length:385 Species:Drosophila melanogaster
Sequence 2:XP_061498949.1 Gene:msi / 1281129 VectorBaseID:AGAMI1_012711 Length:585 Species:Anopheles gambiae


Alignment Length:273 Identity:84/273 - (30%)
Similarity:132/273 - (48%) Gaps:48/273 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 NDSNGNYDDGEEI----TEPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSR 65
            |.|||: ..|...    ::|.. .|||:|||.::|:.:.|..:|..:|.:.||::||||.|:|||
Mosquito   185 NASNGS-SSGRSTPNNGSDPAP-GKLFVGGLSWQTSSEKLSEYFGMFGTVTDVLIMKDPVTQRSR 247

  Fly    66 GFGFITYSQSYMIDNAQNARPHKIDGRTVEPKRAVPRQEIDSPNAGAT-VKKLFVGGLRDDHDEE 129
            ||||||:.:...:|.......|.:||:.::||.|.|:   :.|...:. .||:||||:..|...|
Mosquito   248 GFGFITFQEPNSVDKVLQVPIHTLDGKKIDPKHATPK---NRPKTQSNKTKKIFVGGVSQDTSAE 309

  Fly   130 CLREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKA---- 190
            .::.||..||::....::.|:.|.:.|||.|:.|::.|.||::.....|:||||.::.|||    
Mosquito   310 EVKAYFSQFGKVEETVMLMDQQTKRHRGFGFVTFENEDVVDRVCEIHFHTIKNKKVECKKAQPKE 374

  Fly   191 ----IAKQDMDRQGGGGGRGGPRAGGRGGQGDRGQGGGGWGGQNRQNGGGNWGGAGGGGGFGNSG 251
                .|:|.:.::...|..|.|.                              |||.......:.
Mosquito   375 AVAPTAQQLLQKRIILGNLGVPM------------------------------GAGAPSSAAAAA 409

  Fly   252 GNFGGGQGGGSGG 264
            ...|..|.||:.|
Mosquito   410 RLVGAAQAGGNPG 422

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb87FNP_476806.2 RRM1_hnRNPA_like 25..102 CDD:409992 33/76 (43%)
RRM_SF 116..188 CDD:473069 26/71 (37%)
msiXP_061498949.1 None

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