DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Hrb87F and AgaP_AGAP002335

DIOPT Version :9

Sequence 1:	NP_001163602.1	Gene:	Hrb87F / 48535	FlyBaseID:	FBgn0004237	Length:	385	Species:	Drosophila melanogaster
Sequence 2:	XP_312633.5	Gene:	AgaP_AGAP002335 / 1273632	VectorBaseID:	AGAP002335	Length:	458	Species:	Anopheles gambiae

Alignment Length:	233	Identity:	61/233 - (26%)
Similarity:	90/233 - (38%)	Gaps:	67/233 - (28%)

- Green bases have known domain annotations that are detailed below.

  Fly    17 ITEPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMK----DPKTKRSRGFGFITYSQSYM 77
            :||....:.|::|.||...|::.|...|.:.|.:....:::    ||       |.||.|:
Mosquito     1 MTEESYPKTLYVGNLDTSVTEELLCTLFSQMGTVKSCKIIRETSIDP-------FAFIEYA---- 54

  Fly    78 IDNAQNARPHKIDGRTVEPKRAVPRQEID---SPNAGATVK-------KLFVGGLRDDHDEECLR 132
              |.|:|:    .......||...::||.   :.:||...|       .:|||.|..:.|.|.||
Mosquito    55 --NHQSAQ----TALAAMNKRMFLKKEIRVNWATSAGNQPKTDTSQHHHIFVGDLSPEIDTETLR 113

  Fly   133 EYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKAIAKQDMD 197
            |.|..||:|.:..||.|..|.|.||:||:.|                       ||||.|:..:.
Mosquito   114 EAFAPFGEISNCRIVRDPQTLKSRGYAFVSF-----------------------VKKAEAENAIA 155

  Fly   198 RQGGG--GGRG-----------GPRAGGRGGQGDRGQG 222
            ...|.  |.|.           .||...:|.:..:..|
Mosquito   156 MMNGQWLGSRSIRTNWSTRKPPAPRENSKGIKSGKTPG 193

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Hrb87F	NP_001163602.1	RRM1_hnRNPA_like	25..102	CDD:241022	19/80 (24%)
Hrb87F	NP_001163602.1	RRM_SF	116..188	CDD:302621	23/71 (32%)
AgaP_AGAP002335	XP_312633.5	RRM1_TIA1_like	10..81	CDD:240798	21/87 (24%)
		RRM2_TIA1_like	97..171	CDD:240799	31/96 (32%)
		RRM3_TIA1_like	206..279	CDD:240800
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910