DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hrb87F and rbfox3a

DIOPT Version :9

Sequence 1:NP_001163602.1 Gene:Hrb87F / 48535 FlyBaseID:FBgn0004237 Length:385 Species:Drosophila melanogaster
Sequence 2:XP_021336046.1 Gene:rbfox3a / 100538330 ZFINID:ZDB-GENE-111213-1 Length:429 Species:Danio rerio


Alignment Length:97 Identity:29/97 - (29%)
Similarity:53/97 - (54%) Gaps:12/97 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 TEPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQ 82
            :|.:|.::|.:..:.:|..|..|:..|.::|.|:||.::.:  .:.|:||||:|:..|...|.|:
Zfish   195 SEKQQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN--ERGSKGFGFVTFETSADADRAR 257

  Fly    83 NARPHKIDGRTVEPKRAVPRQEIDSPNAGATV 114
                .|::|..||.::      |:..||.|.|
Zfish   258 ----EKLNGTIVEGRK------IEVNNATARV 279

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hrb87FNP_001163602.1 RRM1_hnRNPA_like 25..102 CDD:241022 22/76 (29%)
RRM_SF 116..188 CDD:302621
rbfox3aXP_021336046.1 RRM_FOX1_like 201..276 CDD:240853 24/86 (28%)
Fox-1_C 310..400 CDD:315148
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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