DRSC/TRiP Functional Genomics Resources

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Protein Alignment PpY-55A and rdgC

DIOPT Version :9

Sequence 1:NP_001286554.1 Gene:PpY-55A / 48532 FlyBaseID:FBgn0003140 Length:314 Species:Drosophila melanogaster
Sequence 2:NP_536738.3 Gene:rdgC / 40224 FlyBaseID:FBgn0265959 Length:746 Species:Drosophila melanogaster


Alignment Length:308 Identity:90/308 - (29%)
Similarity:153/308 - (49%) Gaps:28/308 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 HEIDCIIKELTSLNGSECTLKEELIERLIQQTREVIKW----QPMLLELQAPVNICGDIHGQFTD 67
            :.||.:|.......|:.  |..:.:..::::..:.:|.    .|:...:...|.:|||:||:..|
  Fly   188 NHIDLLIDVFRKKRGNR--LHPKYVALILREAAKSLKQLPNISPVSTAVSQQVTVCGDLHGKLDD 250

  Fly    68 LLRIFKACGFPPKAN-YLFLGDYVDRGKQSLETICLLFAYKVKYPLNFFLLRGNHESASINKIYG 131
            ||.:....|.|..:| |:|.||:|||||:.||.:.||.:..:.:|...||.|||||.:.:|..||
  Fly   251 LLVVLHKNGLPSSSNPYVFNGDFVDRGKRGLEVLLLLLSLYLAFPNAVFLNRGNHEDSVMNARYG 315

  Fly   132 FYDEIK----RRHTVRLWHSFTDCFNWLPVAALVGERIFCCHGGLSPSLRNLQQINHIQR----- 187
            |..|::    |.|. |:.....:.:.|||:.:::..|:...|||.|.| .:|..|..|.|     
  Fly   316 FIREVESKYPRNHK-RILAFIDEVYRWLPLGSVLNSRVLIVHGGFSDS-TSLDLIKSIDRGKYVS 378

  Fly   188 ----------PTDIPDEGIMCDLLWADLNHTTKGWGHNDRGVSFTFDKVIVRDFLKAFDLQLMVR 242
                      |.|..:...:.|::|:|...|.....:..||....|...:..:||:...|..::|
  Fly   379 ILRPPLTDGEPLDKTEWQQIFDIMWSDPQATMGCVPNTLRGAGVWFGPDVTDNFLQRHRLSYVIR 443

  Fly   243 AHEVVEDGYEFFANRQLVTVFSAPNYCGMMNNAGGVMSVSTDLICSFV 290
            :||...:|:||..:.:::|:|||.||..:.:|.|..:.::..|:..||
  Fly   444 SHECKPNGHEFMHDNKIITIFSASNYYAIGSNKGAYIRLNNQLMPHFV 491

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PpY-55ANP_001286554.1 PTZ00480 8..310 CDD:185658 90/307 (29%)
MPP_PP1_PPKL 8..294 CDD:277359 90/307 (29%)
rdgCNP_536738.3 IQ 89..111 CDD:197470
MPP_RdgC 184..494 CDD:277364 90/308 (29%)
EFh 616..681 CDD:238008
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45438795
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S3051
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000018
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.790

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