DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5707 and LDH1

DIOPT Version :9

Sequence 1:NP_001246563.1 Gene:CG5707 / 48422 FlyBaseID:FBgn0026593 Length:361 Species:Drosophila melanogaster
Sequence 2:NP_009763.2 Gene:LDH1 / 852503 SGDID:S000000408 Length:375 Species:Saccharomyces cerevisiae


Alignment Length:129 Identity:35/129 - (27%)
Similarity:55/129 - (42%) Gaps:23/129 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 GWLDNLGTWDKLLPLLPK-HLGVLCIDLPGHGYSSKLPEGIAYHFVDYL----CVILRV------ 106
            |...||..::.||.|:.. ....|.:||||.|:||:..:......|:.:    |.:||.      
Yeast    94 GLAGNLEQFEPLLELVDSDQKAFLTLDLPGFGHSSEWSDYPMLKVVELIFVLVCDVLRKWSTAVP 158

  Fly   107 ----MEEYRWQKVSLMAHSMSAMLCFVFASLY-PHRTD-MLVSIDIVKTRYRKPPSQIDYLRKN 164
                :..:...|:.|:.|||.   ||:...|| .|..| ..|...::.|   .|.:.|:.|.|:
Yeast   159 NNDNVNPFNGHKIVLVGHSMG---CFLACHLYEQHMADTKAVQTLVLLT---PPKAHIEQLSKD 216

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5707NP_001246563.1 MhpC 46..318 CDD:223669 35/129 (27%)
LDH1NP_009763.2 EstA 4..375 CDD:224001 35/129 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157341711
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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