DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GstD5 and Vars1

DIOPT Version :9

Sequence 1:NP_524914.3 Gene:GstD5 / 48338 FlyBaseID:FBgn0010041 Length:216 Species:Drosophila melanogaster
Sequence 2:NP_445744.1 Gene:Vars1 / 25009 RGDID:3950 Length:1264 Species:Rattus norvegicus


Alignment Length:202 Identity:48/202 - (23%)
Similarity:73/202 - (36%) Gaps:42/202 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 PQHTIPTLVD--NGFSIWESRAIAVYLVEKYGKDDTLFPKDPKKQALVNQRLYFDMGTLYDSFAK 110
            |...:|.|..  .|..:|.:.|:| .|:...|...   |...:...||.|.:.:....|..:...
  Rat    53 PPPRLPALEQGPGGLWVWGAPAVA-QLLWPAGLGG---PGGSRAAVLVQQWVSYADTELTPAACG 113

  Fly   111 YYYPLFHTGKPGSDEDF------KKIESSFEYLNIFLEGQNYVAGDHLTVADI-AILSTVSTFE- 167
            ...|......||.|...      |.:....|:|.:    ..|:|||..|:||: |:.:.:..|. 
  Rat   114 ATLPALGLRGPGQDPQAALGALGKALNPLEEWLRL----HTYLAGDAPTLADLAAVTALLLPFRY 174

  Fly   168 IFDFDLNK-YPNVARW-------------------YANAKKVT--PGWE--ENWKGAVELKGVFD 208
            :.|....: :.||.||                   |:.|:.||  ||.|  ...|.|.:||....
  Rat   175 VLDPSARRIWGNVTRWFNTCVRQPEFRAVLGEVVLYSGARSVTQQPGSEITAPQKTAAQLKKEAK 239

  Fly   209 ARQAAAK 215
            .|:...|
  Rat   240 KREKLEK 246

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GstD5NP_524914.3 GstA 1..184 CDD:223698 35/165 (21%)
GST_N_Delta_Epsilon 1..74 CDD:239343 8/27 (30%)
GST_C_Delta_Epsilon 88..204 CDD:198287 34/147 (23%)
Vars1NP_445744.1 GstA <56..203 CDD:223698 34/154 (22%)
GST_C_family 92..213 CDD:295467 26/124 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 218..296 9/29 (31%)
PTZ00419 282..1264 CDD:240411
ValRS_core 335..938 CDD:185677
'HIGH' region 344..354
tRNA-synt_1_2 513..640 CDD:290334
'KMSKS' region 862..866
Anticodon_Ia_Val 938..1075 CDD:153416
Val_tRNA-synt_C 1196..1258 CDD:287436
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0625
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.