DRSC/TRiP Functional Genomics Resources

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Protein Alignment GstD3 and Vars1

DIOPT Version :9

Sequence 1:NP_788656.1 Gene:GstD3 / 48336 FlyBaseID:FBgn0010039 Length:199 Species:Drosophila melanogaster
Sequence 2:NP_445744.1 Gene:Vars1 / 25009 RGDID:3950 Length:1264 Species:Rattus norvegicus


Alignment Length:214 Identity:51/214 - (23%)
Similarity:78/214 - (36%) Gaps:60/214 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 PQHSIPTLVD--NGFTIWESRAILVYLVEKYGKDDALYPKDI-----QKQAVINQR--LYFDMAL 87
            |...:|.|..  .|..:|.:.|:.          ..|:|..:     .:.||:.|:  .|.|..|
  Rat    53 PPPRLPALEQGPGGLWVWGAPAVA----------QLLWPAGLGGPGGSRAAVLVQQWVSYADTEL 107

  Fly    88 MYPTLANYYYKAFTTGQFGSEEDYK----KVQETFDFLNTFLEGQDYVAGDQYTVADI-AILANV 147
            . |........|.  |..|..:|.:    .:.:..:.|..:|....|:|||..|:||: |:.|.:
  Rat   108 T-PAACGATLPAL--GLRGPGQDPQAALGALGKALNPLEEWLRLHTYLAGDAPTLADLAAVTALL 169

  Fly   148 SNFDVVGFDISK---YPNVARW-------------------YDHVKKIT--PGWE----ENWAGA 184
            ..|..| .|.|.   :.||.||                   |...:.:|  ||.|    :..|..
  Rat   170 LPFRYV-LDPSARRIWGNVTRWFNTCVRQPEFRAVLGEVVLYSGARSVTQQPGSEITAPQKTAAQ 233

  Fly   185 L--DVKKR--IEEKQNAAK 199
            |  :.|||  :|:.|...|
  Rat   234 LKKEAKKREKLEKFQQKQK 252

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GstD3NP_788656.1 GST_N_Delta_Epsilon <1..58 CDD:239343 6/27 (22%)
GstA 6..173 CDD:223698 39/176 (22%)
GST_C_Delta_Epsilon 72..188 CDD:198287 37/152 (24%)
Vars1NP_445744.1 GstA <56..203 CDD:223698 37/160 (23%)
GST_C_family 92..213 CDD:295467 31/124 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 218..296 11/35 (31%)
PTZ00419 282..1264 CDD:240411
ValRS_core 335..938 CDD:185677
'HIGH' region 344..354
tRNA-synt_1_2 513..640 CDD:290334
'KMSKS' region 862..866
Anticodon_Ia_Val 938..1075 CDD:153416
Val_tRNA-synt_C 1196..1258 CDD:287436
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0625
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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