DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Polr2F and polr2f

DIOPT Version :10

Sequence 1:NP_524910.1 Gene:Polr2F / 48312 FlyBaseID:FBgn0003275 Length:131 Species:Drosophila melanogaster
Sequence 2:NP_001006888.1 Gene:polr2f / 448728 XenbaseID:XB-GENE-491031 Length:127 Species:Xenopus tropicalis


Alignment Length:128 Identity:88/128 - (68%)
Similarity:100/128 - (78%) Gaps:7/128 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 DNDD-VGGDDFDDVDEDV---DEDINQEEEADNIEIIAPGGAGGGGVPKSKRITTKYMTKYERAR 67
            ||:| ..|||||||:||.   |.|..:||:.:|:.|:.   ||.|.....|||||.|||||||||
 Frog     3 DNEDNFDGDDFDDVEEDEGLDDLDNAEEEDQENVAILP---AGEGQQANQKRITTNYMTKYERAR 64

  Fly    68 VLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIRRYLPDHSYEDWSIDELIMVD 130
            ||||||||||||||:||||:||||||.|||||||.:||||||||||||.|||||.:||||:.|
 Frog    65 VLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Polr2FNP_524910.1 PLN00152 27..130 CDD:177755 73/102 (72%)
polr2fNP_001006888.1 PLN00152 23..127 CDD:177755 75/106 (71%)

Return to query results.
Submit another query.