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Protein Alignment RpII18 and rpb6
DIOPT Version :9
Sequence 1: | NP_524910.1 |
Gene: | RpII18 / 48312 |
FlyBaseID: | FBgn0003275 |
Length: | 131 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_587956.1 |
Gene: | rpb6 / 2539083 |
PomBaseID: | SPCC1020.04c |
Length: | 142 |
Species: | Schizosaccharomyces pombe |
Alignment Length: | 141 |
Identity: | 73/141 - (51%) |
Similarity: | 92/141 - (65%) |
Gaps: | 17/141 - (12%) |
- Green bases have known domain annotations that are detailed below.
Fly 4 ADYDNDDVGGDDFDDVDEDVDE-DINQEEEADNIEIIAPG----------------GAGGGGVPK 51
:||:.|:..|.|...::|:||| ::..|.......:..|| ...|..|.|
pombe 2 SDYEEDEAFGMDGAVMEEEVDELEMIDENGQSQQGVSHPGEPSTTVITEDVASSKTAQSGKAVAK 66
Fly 52 SKRITTKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKELKQKKIPIIIRRYLPDH 116
..|.||.|||||||||:||||||||:|.||::|:|:|||||||||||||.|||||:::||||||.
pombe 67 EDRTTTPYMTKYERARILGTRALQISMNAPVLVDLEGETDPLQIAMKELAQKKIPLLVRRYLPDG 131
Fly 117 SYEDWSIDELI 127
||||||:.|||
pombe 132 SYEDWSVAELI 142
|
Known Domains:
Indicated by green bases in alignment.
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Domainoid |
1 |
1.000 |
89 |
1.000 |
Domainoid score |
I2098 |
eggNOG |
1 |
0.900 |
- |
- |
|
E1_COG1758 |
Hieranoid |
1 |
1.000 |
- |
- |
|
|
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
1 |
1.050 |
135 |
1.000 |
Inparanoid score |
I1404 |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoFinder |
1 |
1.000 |
- |
- |
|
FOG0004261 |
OrthoInspector |
1 |
1.000 |
- |
- |
|
oto100569 |
orthoMCL |
1 |
0.900 |
- |
- |
|
OOG6_101231 |
Panther |
1 |
1.100 |
- |
- |
LDO |
PTHR10773 |
Phylome |
1 |
0.910 |
- |
- |
|
|
RoundUp |
1 |
1.030 |
- |
avgDist |
Average_Evolutionary_Distance |
R1176 |
SonicParanoid |
1 |
1.000 |
- |
- |
|
X2999 |
TreeFam |
1 |
0.960 |
- |
- |
|
|
|
12 | 11.850 |
|
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