DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pkc53E and pkc-3

DIOPT Version :9

Sequence 1:NP_725626.1 Gene:Pkc53E / 48311 FlyBaseID:FBgn0003091 Length:679 Species:Drosophila melanogaster
Sequence 2:NP_495011.1 Gene:pkc-3 / 173914 WormBaseID:WBGene00004034 Length:597 Species:Caenorhabditis elegans


Alignment Length:677 Identity:223/677 - (32%)
Similarity:307/677 - (45%) Gaps:195/677 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 GDPQQQGAEGEAVGENKMKSRLRKGALKKKNVFNVKDHCFIARFFKQPTFCSHCKDFICGYQSGY 73
            |.|:..|...:  ||:  |:..|:||.:.|.::....|.|.|:...:...|..|.|:|       
 Worm    95 GKPELPGLPCQ--GED--KTVYRRGARRWKKIYLYNGHRFQAKRLNRRIQCFICHDYI------- 148

  Fly    74 AWMGFGKQGFQCQVCSYVVHKRCHEYVTFICPGKDKGIDSDSPKTQHNFEPFTYAGPTFCDHCGS 138
             | |.|:|||:|..|...|||:||.:|.                                .|||.
 Worm   149 -W-GIGRQGFRCVDCRLCVHKKCHRHVR--------------------------------THCGQ 179

  Fly   139 LLYGIYHQGLKCSACDMNVHARCKENVPSLCGCDHTERRGRIYLEINVKENLLTVQIKEGRNLIP 203
            .|                                                        :|.|:||
 Worm   180 AL--------------------------------------------------------QGPNIIP 188

  Fly   204 MDPNGLSDPYVKVKLIPDDKDQSKKKTRTIKACLNPVWNETLTYDLKPEDKDRRILIEVWDWDRT 268
            |.|...|       |.....:.|...||:.....|..::|   ::::..                
 Worm   189 MAPASGS-------LKGARSNTSSSTTRSGGGIDNGAFHE---HEIESP---------------- 227

  Fly   269 SRNDFMGALSFGISEIIKNPTNGWFKLLTQDEGEYYNVPCADDEQDLLKLKQKPSQKKPMVMRSD 333
                  |:.|...|..:    ||                                          
 Worm   228 ------GSTSHDASRAM----NG------------------------------------------ 240

  Fly   334 TNTHTSSKKDMIRATDFNFIKVLGKGSFGKVLLAERKGSEELYAIKILKKDVIIQDDDVECTMIE 398
                ..|.|..:...||..:.|:|:||:.||:.||...:.::|||||:||::..:|:|::....|
 Worm   241 ----NGSSKWAVSLNDFRLLTVIGRGSYAKVVQAEHVSTRQIYAIKIIKKEMFNEDEDIDWVQTE 301

  Fly   399 KRVLALGEKPPFLVQLHSCFQTMDRLFFVMEYVNGGDLMFQIQQFGKFKEPVAVFYAAEIAAGLF 463
            |.|.......||||.|||||||..|||||:|:|.||||||.:||..|..|..|.||:.||...|.
 Worm   302 KSVFEAASNYPFLVGLHSCFQTESRLFFVIEFVPGGDLMFHMQQQRKLPEEHARFYSGEIILALH 366

  Fly   464 FLHTKGILYRDLKLDNVLLDADGHVKIADFGMCKENIVGDKTTKTFCGTPDYIAPEIILYQPYGK 528
            |||::||:||||||||||:||:||:|:.|:|||||||.....|.||||||:||||||:....||.
 Worm   367 FLHSRGIIYRDLKLDNVLIDAEGHIKLTDYGMCKENIKDGDLTSTFCGTPNYIAPEILRGDEYGF 431

  Fly   529 SVDWWAYGVLLYEMLVGQPPFD------GED--EEELFAAITDHNVSYPKSLSKEAKEACKGFLT 585
            ||||||.|||::||:.|:.|||      .|:  |:.||..|.:..:..|:|||..|....||||.
 Worm   432 SVDWWALGVLMFEMMAGRSPFDIVGMQNSEENTEDYLFQIILERQIRIPRSLSVRASGILKGFLN 496

  Fly   586 KQPNKRLGCG---SSGEEDVRLHPFFRR-IDWEKIENREVQPPFKPKIKHRKDVSNFDKQFTSEK 646
            |.|.:||||.   :.|..|::.|.|||. ||||.:|.:.|.||:.|.::..:|:::||.|||.|.
 Worm   497 KDPTERLGCKLDINEGLRDMKEHQFFRGFIDWEALEQKAVAPPYHPAVESDRDLTHFDHQFTDEL 561

  Fly   647 TDLTPTDKVFMMNLDQSEFVGFSYMNP 673
            ..|:|.:...:..:|||||.||.|:||
 Worm   562 PQLSPDNPDVIARIDQSEFDGFEYVNP 588

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pkc53ENP_725626.1 C1_cPKC_rpt1 44..110 CDD:410383 21/65 (32%)
C1_cPKC_rpt2 120..173 CDD:410386 4/52 (8%)
C2_PKC_alpha_gamma 177..307 CDD:175992 18/129 (14%)
STKc_cPKC 353..672 CDD:270739 164/330 (50%)
pkc-3NP_495011.1 PB1_aPKC 13..95 CDD:99725 223/677 (33%)
C1_1 128..178 CDD:278556 22/90 (24%)
S_TKc 253..522 CDD:214567 136/268 (51%)
PKc_like 257..586 CDD:304357 163/328 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D614710at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.