DRSC/TRiP Functional Genomics Resources

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Protein Alignment mus101 and slf1

DIOPT Version :10

Sequence 1:NP_524909.1 Gene:mus101 / 48309 FlyBaseID:FBgn0002878 Length:1425 Species:Drosophila melanogaster
Sequence 2:XP_012823830.1 Gene:slf1 / 100495961 XenbaseID:XB-GENE-983324 Length:911 Species:Xenopus tropicalis


Alignment Length:138 Identity:47/138 - (34%)
Similarity:71/138 - (51%) Gaps:13/138 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly  1244 DSCTHLLCERPNRGEKMLACIAAGKWILNIQYIEQSHARGDFLDETLYEWGNPKAINLPTLAPEE 1308
            ::||||:.:.|.|.||.||..:||||:|...|:..|..||.:||||:||||    ..:...:|..
 Frog    48 ENCTHLIAKNPCRSEKWLAACSAGKWVLIKDYVINSVQRGRWLDETIYEWG----YRIERHSPYS 108

  Fly  1309 EPIAAAVHRWRTELSACG-GGAFSDHRV--ILSMNERSGAPIRNVLRAGGACILEPTTPFSKDPV 1370
            ..:.:|..|||..|:..| .|||...:|  ::...::.......|||||.|.|.      :.:.:
 Frog   109 PQMQSAPKRWREHLTRTGVKGAFRKWKVAILVDKGQKQREAFERVLRAGQAIIC------NAEEL 167

  Fly  1371 AKSASHCF 1378
            .:..:|.|
 Frog   168 HEEVTHVF 175

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mus101NP_524909.1 BRCT 127..189 CDD:349339
BRCT_TopBP1_rpt2_like 216..294 CDD:349363
BRCT_TopBP1_rpt3 392..476 CDD:349350
BRCT 707..786 CDD:469589
BRCT_TopBP1_rpt7 1208..1283 CDD:349370 17/38 (45%)
BRCT 1334..1414 CDD:469589 10/47 (21%)
slf1XP_012823830.1 BRCT 12..92 CDD:469589 20/43 (47%)
BRCT 134..207 CDD:469589 10/48 (21%)
ANKYR <656..832 CDD:440430
ANK repeat 659..690 CDD:293786
ANK repeat 692..723 CDD:293786
ANK repeat 726..750 CDD:293786
Blue background indicates that the domain is not in the aligned region.

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