DRSC/TRiP Functional Genomics Resources

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Protein Alignment SNU13 and NHP2

DIOPT Version :9

Sequence 1:NP_001003796.1 Gene:SNU13 / 4809 HGNCID:7819 Length:128 Species:Homo sapiens
Sequence 2:NP_001261849.1 Gene:NHP2 / 44005 FlyBaseID:FBgn0029148 Length:160 Species:Drosophila melanogaster


Alignment Length:122 Identity:38/122 - (31%)
Similarity:65/122 - (53%) Gaps:3/122 - (2%)


- Green bases have known domain annotations that are detailed below.


Human     6 VNPKAYPLADAHLTKKLLDLVQQSCNYKQ-LRKGANEATKTLNRGISEFIVMAADAEPLEIILHL 69
            ||..|.|:|...|.||...||:::..:|. ||.|..:....|.:|.:...:.|.|..|::|:.||
  Fly    37 VNAIAKPMAGKKLAKKCYKLVKKAMKHKTFLRNGLKDVQTRLRKGETGICIFAGDVTPVDIMCHL 101

Human    70 PLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERL 126
            |.:||:|.:||.:..|:..||.|.||.|..:|  :.:::..:.|.....:::.:..|
  Fly   102 PAVCEEKGIPYTYTPSRADLGAAMGVKRGTVA--LLVRQNEEYKDLYDEVKEELSAL 156

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SNU13NP_001003796.1 SNU13 7..128 CDD:411046 37/121 (31%)
Interaction with U4 snRNA and U4atac snRNA. /evidence=ECO:0000269|PubMed:17412961, ECO:0000269|PubMed:21784869 36..48 3/11 (27%)
Important for U4 snRNA-binding. /evidence=ECO:0000269|PubMed:10545122 96..128 4/31 (13%)
NHP2NP_001261849.1 Ribosomal_L7Ae 51..146 CDD:396000 31/96 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1358
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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