DRSC/TRiP Functional Genomics Resources

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Protein Alignment rin and AT1G69250

DIOPT Version :10

Sequence 1:NP_524907.2 Gene:rin / 47998 FlyBaseID:FBgn0015778 Length:690 Species:Drosophila melanogaster
Sequence 2:NP_177085.1 Gene:AT1G69250 / 843256 AraportID:AT1G69250 Length:427 Species:Arabidopsis thaliana


Alignment Length:522 Identity:111/522 - (21%)
Similarity:184/522 - (35%) Gaps:140/522 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 ATQSQQPSPQSVGREFVRQYYTLLNKAPNHLHRFYNHNSSY----IHGESKLVVGQREIHNRIQQ 65
            ||:...||.|.:..|||||||.:|.:.|:...|.|...|..    :.|..........|:..|..
plant     2 ATEGVVPSAQDIAAEFVRQYYHVLGQLPHEARRLYVDASVVSRPDVTGTMMSFTSVEAINKHILS 66

  Fly    66 LNFNDCHAKISQVDAQATLGNGVVVQVTGELSNDGQPMRRFTQTFVLAAQSPKKYYVHNDIFRYQ 130
            .:|.:...::..||:|.:|.:|:.:.|.|.::......|:|:|.|.||.|:  ...|.||:.||.
plant    67 CDFENTKFEVLSVDSQNSLEDGIFIMVIGFMTGKDNQRRKFSQMFYLARQN--TLVVLNDMLRYV 129

  Fly   131 DLYIEDEQ----------------DGESRSENDE--EHDVQVVGGTVDQAV-------------Q 164
            |.  ||..                ||..::|..|  :.:|..|..:|:.||             |
plant   130 DQ--EDSSTTETPCEPVTEIVRPADGLKKAEKTELKQKNVASVEKSVNAAVEKNAAPLDNGKMKQ 192

  Fly   165 VAGDVVAQQPQQQQAPPQPQAQVVVPQQVAPVAAGGAAPQQIFYPLPAGAAAGRPVAVLPPAPQA 229
            ....|:.|:..:..|.|||.........:....|..|||.|:..|:.|.....:.|.    .|:|
plant   193 SEKAVITQKVTEPDAAPQPDGAKRSFADIVGSMAKNAAPFQVKSPVQAPVQKPKYVG----QPRA 253

  Fly   230 AAVPLPAQFTVPPPQPIQNGVVSHEELQQQQVLVPPSVSPLVQQQQPTGTPVLPIVPVPSAGFQQ 294
            ||.|       ..|..:...:..::    |:|:..|..|..|..        ||:..:|      
plant   254 AAAP-------QKPAYVSKSIKKND----QKVIEVPGTSIFVAN--------LPLNAMP------ 293

  Fly   295 SPLVAPQLIQQQQQQQPAQLPPQQQQQQQPIQQQQPLQQQQQPLAEPEEVEVAPRQQKPPTPVED 359
                 |||.:.                                                   .:|
plant   294 -----PQLFEL---------------------------------------------------FKD 302

  Fly   360 FKTIHEQQQQEKYEAAKQQQNEPKTYANLFKSTSSSPSGFVNAALQQQQQL--QQQQQQQQSISS 422
            |..|.|...|.:   :.:....|..:..:...|.:|....:.||......|  ::.:.:::.:..
plant   303 FGPIKENGIQVR---SSRGNANPVCFGFISFETVASVQSVLQAAKNTPFMLADRKLRVKEKEVDY 364

  Fly   423 NTYNSSSATSGGGNGSQVSYSTTASSYNNSNGNSRLDNGGPLPQR-NNSIRNNKGDFEQRRSSNT 486
            :....|..|.||.|.:|          |.|..:|:.:||.....: |.|..:.:.:|:|.:|...
plant   365 DGSKPSGKTKGGSNKTQ----------NGSADSSKTENGSADDSKTNGSAEDGEKEFKQVKSRRN 419

  Fly   487 QQ 488
            ::
plant   420 RK 421

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rinNP_524907.2 NTF2 12..131 CDD:238403 37/122 (30%)
RRM_G3BP 490..580 CDD:409676
AT1G69250NP_177085.1 NTF2 9..130 CDD:238403 37/122 (30%)
RRM 281..357 CDD:214636 19/148 (13%)
Blue background indicates that the domain is not in the aligned region.

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