DRSC/TRiP Functional Genomics Resources

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Protein Alignment rin and AT5G60980

DIOPT Version :9

Sequence 1:NP_524907.2 Gene:rin / 47998 FlyBaseID:FBgn0015778 Length:690 Species:Drosophila melanogaster
Sequence 2:NP_001331368.1 Gene:AT5G60980 / 836219 AraportID:AT5G60980 Length:460 Species:Arabidopsis thaliana


Alignment Length:697 Identity:158/697 - (22%)
Similarity:243/697 - (34%) Gaps:259/697 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 ATQSQQPSP--QSVGREFVRQYYTLLNKAPNHLHRFYNHNSSY-----IHGESKLVVGQREIHNR 62
            |.|...|||  :.|||.||.|||.:|:::|..:|||| .:||:     :.|....|...:.|:::
plant     2 AQQEASPSPGAEVVGRAFVEQYYHILHQSPGLVHRFY-QDSSFLTRPDVTGAVTTVTTMQAINDK 65

  Fly    63 IQQLNFNDCHAKISQVDAQATLGNGVVVQVTGELSNDGQPMRRFTQTFVLAAQSPKKYYVHNDIF 127
            |..|.:.|..|:|...|||.:...||:|.|||.|:.:....::|:|:|.||.|. |.|:|.||:|
plant    66 ILSLKYEDYTAEIETADAQESHERGVIVLVTGRLTGNDNVRKKFSQSFFLAPQD-KGYFVLNDVF 129

  Fly   128 RYQDLYIEDEQDGESRSENDEEHDVQVVGGTVDQAVQVAGDVVAQQPQQQQAPPQPQAQVVVPQQ 192
            |:.:   |.|...::||       |.:.|.|.|                .|||       :.|::
plant   130 RFLE---EKEVTAQARS-------VPINGTTRD----------------VQAP-------IEPER 161

  Fly   193 VAPVAAGGAAPQQIFYPLPAGAAAGRPVAVLPPAPQAAAVPLPAQFTVPPPQPIQNGVVSHEELQ 257
            |                                                        |||||   
plant   162 V--------------------------------------------------------VVSHE--- 167

  Fly   258 QQQVLVPPSVSPLVQQQQPTGTPVLPIVPVPSAGFQQSPLVAPQLIQQQQQQQPAQLPPQQQQQQ 322
                   |.|.|               .||.|             |:::.....|::        
plant   168 -------PEVEP---------------EPVAS-------------IEEEDLDNVAEV-------- 189

  Fly   323 QPIQQQQPLQQQQQPLAEPEEVEVAPRQQKPPTPVEDFKTIHEQQQQEKYEAAKQQQNEPK-TYA 386
                 ..|..:.:..:.:.|.:|       |||.:...:.:           :..|.:.|| :||
plant   190 -----YDPSDKDEGVVVDVEPIE-------PPTQISHNEIL-----------SVPQGDAPKHSYA 231

  Fly   387 NLFKSTSSSPSGFVNAALQQQQQLQQQQQQQQSISSNTYNSSSATSGGGNGSQVSYSTTASSYNN 451
            ::.|...|||:...:.|..:.:.....|:..                 ...::.:....||::.|
plant   232 SILKQMKSSPAPTTHVARNKPRPAPVNQKLT-----------------APPAEPAARPEASAHEN 279

  Fly   452 SNGNSRLDNGGPLPQRNNSIRNNKGDFEQRRSSNTQQFGDNQQLFLGNIPHHASEDDLREIFSRF 516
            ...:|.:                  |.|.          |...:::.|:|..::...|.|:|..|
plant   280 VPNSSHV------------------DVED----------DGHSIYVRNLPFDSTPTQLEEVFKNF 316

  Fly   517 GNVLELRILSKAGNKVPPGMRSPLNYGFITYDDPEAVQKCLANCPLYFPENSPDGQKLNVEEKKP 581
            |      .:...|.:|....:....:||:.::.....|..|...|:...:     ::..|||||.
plant   317 G------AIKHEGIQVRSNKQQGFCFGFVEFETSSGKQSALEASPVTIGD-----RQAVVEEKKT 370

  Fly   582 RVRNDMVPRQQIGGNNLNNNMGRLGGNNGPQSRPMGNNNGSGGGMMRNNA--GGNNLRQGGGGGN 644
            ..|.        ||||        ||:.|        ...||.|..||.:  ||    :||||..
plant   371 NSRG--------GGNN--------GGSRG--------RYFSGRGSFRNESFKGG----RGGGGRG 407

  Fly   645 GAPRLGGGGGFGQR--QDNRTGGGNNQSNGPLRGAGNGQSGGGNYGR 689
            |..|  |||.|..|  ..|...||......|..| |.|:.|.|..||
plant   408 GYGR--GGGEFSGRPKSSNPRNGGEGYQRVPQNG-GGGRGGRGEGGR 451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rinNP_524907.2 NTF2 12..131 CDD:238403 49/125 (39%)
RRM 423..>557 CDD:223796 19/133 (14%)
RRM_G3BP 490..580 CDD:240675 18/89 (20%)
AT5G60980NP_001331368.1 NTF2 12..131 CDD:238403 46/120 (38%)
RRM 294..365 CDD:214636 14/81 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 84 1.000 Domainoid score I2844
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 137 1.000 Inparanoid score I1815
OMA 1 1.010 - - QHG53615
OrthoDB 1 1.010 - - D1526879at2759
OrthoFinder 1 1.000 - - FOG0000749
OrthoInspector 1 1.000 - - otm3238
orthoMCL 1 0.900 - - OOG6_102794
Panther 1 1.100 - - O PTHR10693
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X634
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1211.980

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