DRSC/TRiP Functional Genomics Resources

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Protein Alignment rin and AT5G48650

DIOPT Version :9

Sequence 1:NP_524907.2 Gene:rin / 47998 FlyBaseID:FBgn0015778 Length:690 Species:Drosophila melanogaster
Sequence 2:NP_199676.2 Gene:AT5G48650 / 834922 AraportID:AT5G48650 Length:458 Species:Arabidopsis thaliana


Alignment Length:685 Identity:143/685 - (20%)
Similarity:234/685 - (34%) Gaps:260/685 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 MDATQSQQ--PSPQSVGREFVRQYYTLLNKAPNHLHRFYNHNSSYIHGESKLVVGQ--------- 56
            ||:|.:.:  ..|.:||..||.|||.:....|.||.|||...|..  |.    |||         
plant     1 MDSTAATKRVVDPLTVGSAFVNQYYYIFCNMPEHLPRFYQEISRV--GR----VGQDGVMRDFST 59

  Fly    57 -REIHNRIQQLNFNDCH-AKISQVDAQATLGNGVVVQVTGELSNDGQPMRRFTQTFVLAAQSPKK 119
             :.|...:::|.:.||: |:|:..|.|.:...|.::.|||..:.:.:..|:|||||.||.|. |.
plant    60 FQGISEELKRLTYGDCNSAEITSYDTQESHNGGFLLFVTGYFTLNERSRRKFTQTFFLAPQE-KG 123

  Fly   120 YYVHNDIFRYQDLYIEDEQDGESRSENDEEHDVQVVGGTVDQAVQVAGDVVAQQPQQQQAPPQPQ 184
            ::|.|||.|:               .||:..|  .|..|:|      |:||              
plant   124 FFVLNDILRF---------------VNDDAKD--NVPETID------GEVV-------------- 151

  Fly   185 AQVVVPQQVAPVAAGGAAPQQIFYPLPAGAAAGRPVAV--LPPAPQAAAVPLPAQFTVPPPQPIQ 247
                                       :|..:..|..:  :..:.|||.|               
plant   152 ---------------------------SGINSTTPTIINGMKGSEQAACV--------------- 174

  Fly   248 NGVVSHEELQQQQVLVPPSVSPLVQQQQPTGTPVLPIVPVPSAGFQQSPLVAPQLIQQQQQQQPA 312
                              ||:|:.::...         |:.:...:.:.|| |::..:       
plant   175 ------------------SVNPVCKEVSK---------PLDNENAKDNVLV-PEIANE------- 204

  Fly   313 QLPPQQQQQQQPIQQQQPLQQQQQPLAEPEEV--EVAPRQQKPPTPVEDFKTIHEQQQQEKYEAA 375
                                     :|..|..  |||...||...|.:...           :|.
plant   205 -------------------------VARTEITCKEVADDSQKNYDPDDGLA-----------DAP 233

  Fly   376 KQQQNEPKTYANLFKSTSSSPSGFVNAALQQQQQLQQQQQQQQSISSNTYN--SSSATSGGGNGS 438
            |      |:||::.|.|... .|....:|...:::.:.|:.|.....:|..  .........:.|
plant   234 K------KSYASVLKVTKDK-FGVPAVSLPSPKKIPKDQEHQAPSDPSTGQILKDQGQQASSDPS 291

  Fly   439 QVSYSTTASSYNNSNGNSRLDNGGPLPQRNNSIRNNKGDFEQRRSSNTQQFGDNQQLFLGNIPHH 503
            ||..|.|.|...:::.|..                           |.:...:...:::.::|.:
plant   292 QVIESDTVSESVDASENGH---------------------------NQEAVAEGTSIYVRHLPFN 329

  Fly   504 ASEDDLREIFSRFGNVLE--LRILSKAGNKVPPGMRSPLNYGFITYDDPEAVQKCLANCPLYFPE 566
            |:.|.|...|.:||.:..  ::::::.|...|        |||:.:::.:|..:.:...|:..  
plant   330 ANIDMLEAEFKQFGAITNGGIQVINQRGLGYP--------YGFVEFEEADAAHRAIEASPVKI-- 384

  Fly   567 NSPDGQKLNVEEKKPRVRNDMVPRQQIGGNNLNNNMGRLG-GNNGPQSRPMGNNNGSGGGMMRNN 630
               .|.:..||||                  |:.:.|:.| ||.|     .||.|...|...|.:
plant   385 ---GGLRAFVEEK------------------LSTSRGKRGNGNVG-----YGNRNVGVGMRGRGS 423

  Fly   631 AG-GNNLRQGGGGGNGAPRLGGGGGFGQRQDNRTG 664
            .| |.:.|:||.|       .||||   |..||.|
plant   424 YGYGYDYRRGGRG-------PGGGG---RSFNRRG 448

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rinNP_524907.2 NTF2 12..131 CDD:238403 46/129 (36%)
RRM 423..>557 CDD:223796 22/137 (16%)
RRM_G3BP 490..580 CDD:240675 18/91 (20%)
AT5G48650NP_199676.2 NTF2 12..135 CDD:238403 46/144 (32%)
RRM 219..>413 CDD:223796 50/274 (18%)
RRM 320..391 CDD:214636 15/83 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 84 1.000 Domainoid score I2844
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 137 1.000 Inparanoid score I1815
OMA 1 1.010 - - QHG53615
OrthoDB 1 1.010 - - D1526879at2759
OrthoFinder 1 1.000 - - FOG0000749
OrthoInspector 1 1.000 - - otm3238
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10693
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X634
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1010.080

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