DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rin and g3bp1

DIOPT Version :9

Sequence 1:NP_524907.2 Gene:rin / 47998 FlyBaseID:FBgn0015778 Length:690 Species:Drosophila melanogaster
Sequence 2:XP_031753812.1 Gene:g3bp1 / 549800 XenbaseID:XB-GENE-6036635 Length:507 Species:Xenopus tropicalis


Alignment Length:678 Identity:198/678 - (29%)
Similarity:285/678 - (42%) Gaps:235/678 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MVMDATQSQQPSPQSVGREFVRQYYTLLNKAPNHLHRFYNHNSSYIHG-------ESKLVVGQRE 58
            |||     ::|||..||||||||||||||:||:.|||||..:|||:||       .::.|.||.:
 Frog    34 MVM-----EKPSPLLVGREFVRQYYTLLNQAPDFLHRFYGKSSSYVHGGLDTNGKPAEAVYGQTD 93

  Fly    59 IHNRIQQLNFNDCHAKISQVDAQATLGNGVVVQVTGELSNDGQPMRRFTQTFVLAAQS--PKKYY 121
            ||.::..|||.||..||..|||.|||.:||||||.|||||:.||||||.||||||.:.  ..|:|
 Frog    94 IHKKVMSLNFKDCRTKIRHVDAHATLNDGVVVQVMGELSNNRQPMRRFMQTFVLAPEGSVANKFY 158

  Fly   122 VHNDIFRYQDLYIEDEQDGESRSENDEEHDVQVVGGTVDQAVQVAGDVVAQQPQQQQAPPQPQAQ 186
            ||||||||||....| .|.|...|:|||.:                    :|.::||:|     :
 Frog   159 VHNDIFRYQDEVFGD-SDTEPPEESDEEAE--------------------EQEERQQSP-----E 197

  Fly   187 VVVPQQVAPVAAGGAAPQQIFYPLPAGAAAGRPVAVLPPAPQAAAVPLPAQFTVPPPQPIQNGVV 251
            ||            ||.:..:|..|.                                       
 Frog   198 VV------------AADEPTYYEQPG--------------------------------------- 211

  Fly   252 SHEELQQQQVLVPPSVSPLVQQQQPTGTPVLPIVPVPSAGFQQSPLVAPQLIQQQQQQQPAQLPP 316
            ::.:|.:          ||.:                            |::..:.:|:|   .|
 Frog   212 NNNDLDE----------PLEE----------------------------QVVDAEPEQEP---EP 235

  Fly   317 QQQQQQQPIQQQ-QPLQQQQQPLAEPEEVEVAPRQQKPPTPVEDFKTIHEQQQQEKYEAAKQQQN 380
            :|:.:.:.:::: :|:.::..| .|.||..||..:...|.|.               :.|...|.
 Frog   236 EQEPEPEAVEEKCEPVSEEPAP-EEEEEETVAIERSPSPLPA---------------DPAPAVQE 284

  Fly   381 EPKTYANLFKSTSSSPSGFVNAALQQQQQLQQQQQQQQSISSNTYNSSSATSGGGNGSQVSYSTT 445
            :|:|::                              ..|::|.....|.|....|....|....|
 Frog   285 DPRTFS------------------------------WASVTSKNLPPSGAVPVSGIPPHVVKVQT 319

  Fly   446 ASSYNNSNGNSRLDNGGPLPQRNNSIRNNK-----------------GDFEQRRSSNTQQFGDNQ 493
            :....::...::.....| |||:..||..:                 |:.|.||.:   ::.|:.
 Frog   320 SQPRPDTKSEAQTTAQRP-PQRDQRIREQRTTVPPPRGPRPLREGEPGESETRRMN---RYPDSH 380

  Fly   494 QLFLGNIPHHASEDDLREIFSRFGNVLELRILSKAGNKVPPGMRSPLNYGFITYDDPEAVQKCLA 558
            |||:||:||...:.:|:|.|..:|||:||||  .:|.|:|       |:||:.:||.:.|||.|.
 Frog   381 QLFVGNLPHDVDKSELKEFFQTYGNVVELRI--NSGGKLP-------NFGFVVFDDADPVQKILG 436

  Fly   559 NCPLYFPENSPDGQKLNVEEKKPRVRNDMVPRQQIGGNNLNNNMGRLGGNNGPQSR-PMGNNNGS 622
            |.|:.|..:    .:|||||||.|.                   .|.|...|.:.| |.|...|.
 Frog   437 NRPIMFRGD----VRLNVEEKKTRA-------------------AREGDRRGERPRGPGGPRGGL 478

  Fly   623 GGGMMRNNAGGNNLRQGGGGGNG--APR 648
            |||:.....|..:.:.|.|.|.|  :||
 Frog   479 GGGLRGPPRGAMSQKPGFGAGRGVQSPR 506

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rinNP_524907.2 NTF2 12..131 CDD:238403 79/127 (62%)
RRM 423..>557 CDD:223796 44/150 (29%)
RRM_G3BP 490..580 CDD:240675 38/89 (43%)
g3bp1XP_031753812.1 NTF2 40..168 CDD:238403 79/127 (62%)
RRM_G3BP1 377..456 CDD:409896 40/91 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 160 1.000 Domainoid score I4010
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53615
OrthoDB 1 1.010 - - D1526879at2759
OrthoFinder 1 1.000 - - FOG0000749
OrthoInspector 1 1.000 - - otm48702
Panther 1 1.100 - - LDO PTHR10693
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R463
SonicParanoid 1 1.000 - - X634
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1010.060

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