DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rin and g3bp2

DIOPT Version :10

Sequence 1:NP_524907.2 Gene:rin / 47998 FlyBaseID:FBgn0015778 Length:690 Species:Drosophila melanogaster
Sequence 2:NP_989273.1 Gene:g3bp2 / 394887 XenbaseID:XB-GENE-480361 Length:484 Species:Xenopus tropicalis


Alignment Length:698 Identity:205/698 - (29%)
Similarity:289/698 - (41%) Gaps:253/698 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MVMDATQSQQPSPQSVGREFVRQYYTLLNKAPNHLHRFYNHNSSYIHG-------ESKLVVGQRE 58
            |||     ::|||..|||||||||||||||||:.|||||..||||:||       ..:.|.||.|
 Frog     1 MVM-----EKPSPLLVGREFVRQYYTLLNKAPDFLHRFYGRNSSYVHGGLDATGKPQEAVYGQAE 60

  Fly    59 IHNRIQQLNFNDCHAKISQVDAQATLGNGVVVQVTGELSNDGQPMRRFTQTFVLAAQS--PKKYY 121
            ||.::..|.|::|..||..|||.|||.:||||||.|||||:|||||:|.||||||.:.  |.|:|
 Frog    61 IHKKVMSLQFSECRTKIRHVDAHATLSDGVVVQVMGELSNNGQPMRKFMQTFVLAPEGSVPNKFY 125

  Fly   122 VHNDIFRYQDLYIEDEQDGESRSENDEEHDVQVVGGTVDQAVQVAGDVVAQQPQQQQAPPQPQAQ 186
            ||||||||     |||..|:|.:|.|||.:.:|                  :.:|::..|.|:  
 Frog   126 VHNDIFRY-----EDEVFGDSEAEMDEESEEEV------------------EEEQEERQPSPE-- 165

  Fly   187 VVVPQQVAPVAAGGAAPQQIFYPLPAGAAAGRPVAVLPPAPQAAAVPLPAQFTVPPPQPIQNGVV 251
                                    ||......  |...|.|.:..|..|.:..|..|:|.....:
 Frog   166 ------------------------PAQENTNN--AYYEPHPVSNGVEEPLEEPVNEPEPEPEPEI 204

  Fly   252 SHEELQ-----------QQQVLVPPSVSPLVQQQQP---------TGTPVLPIVPVPSAGFQQSP 296
            .:||::           :::...||...|:|..|:|         |...:.|...||::|     
 Frog   205 KNEEIKPETEEKVQEELEEKSPTPPPAEPVVLPQEPPKAFSWASVTSKNLPPSGTVPASG----- 264

  Fly   297 LVAPQLIQQQQQQQPAQLPPQQQQQQQPIQQQQPLQQQQQPLAEPEEVEVAPRQQKPPTPVEDFK 361
             :.|.:|:....|....:.|:...|...:::|:|   :::|..:|.    .||.           
 Frog   265 -IPPHVIKAPASQARVDVKPEAPAQSLRVREQRP---RERPAFQPR----GPRV----------- 310

  Fly   362 TIHEQQQQEKYEAAKQQQNEPKTYANLFKSTSSSPSGFVNAALQQQQQLQQQQQQQQSISSNTYN 426
                                                                             
 Frog   311 ----------------------------------------------------------------- 310

  Fly   427 SSSATSGGGNGSQVSYSTTASSYNNSNGNSRLDNGGPLPQRNNSIRNNKGDFEQRRSSNTQ--QF 489
                   ||                     |.||                  ||..|.|.:  ::
 Frog   311 -------GG---------------------RSDN------------------EQSESDNRRMYRY 329

  Fly   490 GDNQQLFLGNIPHHASEDDLREIFSRFGNVLELRILSK-AGNKVPPGMRSPLNYGFITYDDPEAV 553
            .|:.|||:||:||...|.:|:|.|..:|||:||||.:| .|.|:|       |:||:.:||.|.|
 Frog   330 PDSHQLFVGNLPHDIDESELKEFFMSYGNVMELRINTKGVGGKLP-------NFGFVVFDDSEPV 387

  Fly   554 QKCLANCPLYFPENSPDGQ-KLNVEEKKPRVRNDMVPRQQIGGNNLNNNMGRLGGNNGPQSRPMG 617
            |:.|.:.|:.|     .|: :|||||||.|...:   |:..||::..:......|..||:..   
 Frog   388 QRILLSKPIMF-----RGEVRLNVEEKKTRAARE---RETRGGDDRRDIRRNDRGPGGPRGL--- 441

  Fly   618 NNNGSGGGMMRNNAG------GNNLRQGGGGGNGAPRLGGGGGFGQRQ 659
                ..|||:|:..|      |..:::.|.|..|||.:.|... |||:
 Frog   442 ----ISGGMVRDRDGRGPPPRGGMVQKLGSGRGGAPPVEGRFS-GQRR 484

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rinNP_524907.2 NTF2 12..131 CDD:238403 81/127 (64%)
RRM_G3BP 490..580 CDD:409676 40/91 (44%)
g3bp2NP_989273.1 NTF2 7..135 CDD:238403 81/132 (61%)
PRK12323 <210..>326 CDD:481241 31/250 (12%)
RRM_G3BP2 328..410 CDD:409897 40/93 (43%)

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