DRSC/TRiP Functional Genomics Resources

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Protein Alignment rin and G3bp2

DIOPT Version :9

Sequence 1:NP_524907.2 Gene:rin / 47998 FlyBaseID:FBgn0015778 Length:690 Species:Drosophila melanogaster
Sequence 2:XP_006250795.1 Gene:G3bp2 / 305240 RGDID:1309571 Length:482 Species:Rattus norvegicus


Alignment Length:693 Identity:215/693 - (31%)
Similarity:291/693 - (41%) Gaps:243/693 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MVMDATQSQQPSPQSVGREFVRQYYTLLNKAPNHLHRFYNHNSSYIHG-------ESKLVVGQRE 58
            |||     ::|||..|||||||||||||||||.:|||||..||||:||       ..:.|.||.:
  Rat     1 MVM-----EKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQND 60

  Fly    59 IHNRIQQLNFNDCHAKISQVDAQATLGNGVVVQVTGELSNDGQPMRRFTQTFVLAAQS--PKKYY 121
            ||:::..|||::||.||..|||.|||.:||||||.|.|||.|||.|:|.||||||.:.  |.|:|
  Rat    61 IHHKVLSLNFSECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSVPNKFY 125

  Fly   122 VHNDIFRYQDLYIEDEQDGESRSENDEEHDVQVVGGTVDQAVQVAGDVVAQQPQQQQAPPQPQAQ 186
            ||||:|||     |||..|:|..|.|||.:                |.|.::.:.:|..|:|   
  Rat   126 VHNDMFRY-----EDEVFGDSEPELDEESE----------------DEVEEEQEDRQPSPEP--- 166

  Fly   187 VVVPQQVAPVAAGGAAPQQIFYPLPAGAAAGRPVAVLPPAPQAAAVPLPAQFTVPPPQPIQNGVV 251
               .|:.|..|         :|                                 ...|:.||: 
  Rat   167 ---VQENANSA---------YY---------------------------------EAHPVTNGI- 185

  Fly   252 SHEELQQQQVLVPPSVSPLVQQQQPTGTPVLPIVPVPSAGFQQSPLVAPQLIQQQQQQQPAQLPP 316
              ||                              |:..:..:..|       :.:.:.:..:|.|
  Rat   186 --EE------------------------------PLEESSHEPEP-------EPESETKTEELKP 211

  Fly   317 QQQQQQQPIQQQQPLQQQQQPLAEPEEVEVAPRQQKPPTPVEDFKTIHEQQQQEKYEAAKQQQNE 381
            |.:::.               |.|.||....|    |||                 |.|...|..
  Rat   212 QAEEKH---------------LEELEEKSATP----PPT-----------------EPASLPQEP 240

  Fly   382 PKTYA-------NLFKSTSSSPSGF---VNAALQQQQQLQQQQQQQQSISSNTYNSSSATSGGGN 436
            ||.::       ||..|.:.|.||.   |.|.:.|.:...:.:.|.|.                 
  Rat   241 PKAFSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQPRVDAKPEVQSQP----------------- 288

  Fly   437 GSQVSYSTTASSYNNSNGNSRLDNGGP-----LPQRNNSIRNNKGDFEQRRSSNTQ--QFGDNQQ 494
                               .|:....|     .|.|..  |..:||.||..|.|.:  ::.|:.|
  Rat   289 -------------------PRVREQRPRERPGFPPRGP--RPGRGDTEQNDSDNRRIIRYPDSHQ 332

  Fly   495 LFLGNIPHHASEDDLREIFSRFGNVLELRILSK-AGNKVPPGMRSPLNYGFITYDDPEAVQKCLA 558
            ||:||:||...|::|:|.|..||||:||||.:| .|.|:|       |:||:.:||.|.||:.|.
  Rat   333 LFVGNLPHDIDENELKEFFMSFGNVVELRINTKGVGGKLP-------NFGFVVFDDSEPVQRILI 390

  Fly   559 NCPLYFPENSPDGQ-KLNVEEKKPRVRNDMVPRQQIGGNNLNNNMGRLGGNNGPQSRPMGNNNG- 621
            ..|:.|     .|: :|||||||.|...:   |:..||.:...::.|  .:.||     |...| 
  Rat   391 AKPIMF-----RGEVRLNVEEKKTRAARE---RETRGGGDDRRDIRR--NDRGP-----GGPRGI 440

  Fly   622 SGGGMMRNNAGGNNLRQGGGGGNGAPRLGGGGGFGQRQDNRTG 664
            .||||||:..|.....:||    ...:||.|.|.||.:...||
  Rat   441 VGGGMMRDRDGRGPPPRGG----MTQKLGSGRGTGQMEGRFTG 479

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rinNP_524907.2 NTF2 12..131 CDD:238403 79/127 (62%)
RRM 423..>557 CDD:223796 43/141 (30%)
RRM_G3BP 490..580 CDD:240675 41/91 (45%)
G3bp2XP_006250795.1 NTF2 7..135 CDD:238403 79/132 (60%)
RRM <319..>414 CDD:223796 46/106 (43%)
RRM_G3BP2 326..408 CDD:240910 41/93 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166353152
Domainoid 1 1.000 157 1.000 Domainoid score I4063
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 287 1.000 Inparanoid score I2750
OMA 1 1.010 - - QHG53615
OrthoDB 1 1.010 - - D1526879at2759
OrthoFinder 1 1.000 - - FOG0000749
OrthoInspector 1 1.000 - - otm45610
orthoMCL 1 0.900 - - OOG6_102794
Panther 1 1.100 - - O PTHR10693
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X634
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1312.910

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