DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rin and nxt3

DIOPT Version :9

Sequence 1:NP_524907.2 Gene:rin / 47998 FlyBaseID:FBgn0015778 Length:690 Species:Drosophila melanogaster
Sequence 2:NP_596518.1 Gene:nxt3 / 2541364 PomBaseID:SPBP8B7.11 Length:434 Species:Schizosaccharomyces pombe


Alignment Length:646 Identity:140/646 - (21%)
Similarity:207/646 - (32%) Gaps:275/646 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 VGREFVRQYYTLLNKAPNHLHRFYNHNSSYIHGES----KLVVGQREIHNRIQQLNFNDCHAKIS 76
            :|..||::|||.|||.||.||.||...|:.|||:.    .|..||:||||:|..|:|.:|...||
pombe    18 IGWMFVQEYYTYLNKEPNRLHCFYTKKSTLIHGDEGESISLCHGQQEIHNKILDLDFQNCKVLIS 82

  Fly    77 QVDAQATLGNGVVVQVTGELSNDGQPMRRFTQTFVLAAQSPKKYYVHNDIFRYQDLYIEDEQDGE 141
            .||:.|:...|:|:||.||:||.|:..|:|.|||.||.| |..|:|.|||||:....:|:|::..
pombe    83 NVDSLASSNGGIVIQVLGEMSNKGKLSRKFAQTFFLAEQ-PNGYFVLNDIFRFLREDVEEEEESP 146

  Fly   142 SRSENDEEHDVQVVGGTVDQAVQVAGDVVAQQPQQQQAPPQPQAQVVVPQQVAPVAAGGAAPQQI 206
            ...|.:::                  ||.:                                   
pombe   147 DAVEKEKK------------------DVAS----------------------------------- 158

  Fly   207 FYPLPAGAAAGRPVAVLPPAPQAAAVPLPAQFTVPPPQPIQNGVVSHEELQQQQVLVPPSVSPLV 271
                                                 :|..|||.|.|.|        ||.....
pombe   159 -------------------------------------EPYVNGVQSQEHL--------PSAKEEG 178

  Fly   272 QQQQPTGTPVLPIVPVPSAGFQQSPLVAPQLIQQQQQQQPAQLPPQQQQQQQPIQQQQPLQQQQQ 336
            ..|.|..|              ::......||..:..                       ...|.
pombe   179 HYQDPAAT--------------ENNFATAALISNETD-----------------------SLNQA 206

  Fly   337 PLAEPEEVEVAPRQQKPPTPVEDFKTIHEQQQQEKYEAAKQQQNEPKTYANLFKSTSSSPSGFVN 401
            .||.|||            ||                               .:.|.:|...||:
pombe   207 TLAVPEE------------PV-------------------------------IQVTEASVPSFVS 228

  Fly   402 AALQQQQQLQQQQQQQQSISSNTYNSSSATSGGGN-------------------GSQVSYSTTAS 447
               ||:.||     |.::::||:.|:.:..:...|                   .||.|.|:|||
pombe   229 ---QQENQL-----QDEALTSNSKNADAIGASDANVATAPKSWADLIARNHPDVKSQASVSSTAS 285

  Fly   448 SYNNS----NGNSRLDNGGPLPQRNNSIRNNKGDFEQRRSSNTQQFGDNQQLFLGNIPHHASEDD 508
            :...:    |.:.......|..|.|..:..:                    :|:.|||...|:..
pombe   286 TTGQTVKGVNADQTQQPTAPYTQSNELLETS--------------------VFVKNIPPETSDVS 330

  Fly   509 LREIFSRFGNVLELRILSKAGNKVPPGMRSPLNYGFITYDDPEAVQKCLANCPLYFPENSPDGQK 573
            |:...|.||.|..:....:.|.            .::.:.:.|.||..|....|..     :...
pombe   331 LKSAMSIFGPVKAIEFARRKGT------------AYVDFVNHECVQLALNKKTLQI-----NNAT 378

  Fly   574 LNVEEKKPRVRNDMVPRQQIGGNNLNNNMGRLGGNNGPQSRPMGNNNGSGGGMMRNNAGGN 634
            ||:||           |:::.....|.:..:             .:|.:..||.||...||
pombe   379 LNIEE-----------RRRLFSGKFNKSGDK-------------KSNDNYNGMKRNFRKGN 415

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rinNP_524907.2 NTF2 12..131 CDD:238403 60/118 (51%)
RRM 423..>557 CDD:223796 28/156 (18%)
RRM_G3BP 490..580 CDD:240675 20/89 (22%)
nxt3NP_596518.1 NTF2 16..134 CDD:238403 59/116 (51%)
RRM <308..>420 CDD:223796 31/169 (18%)
RRM_6 317..380 CDD:290958 16/79 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 116 1.000 Domainoid score I1522
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000749
OrthoInspector 1 1.000 - - oto101405
orthoMCL 1 0.900 - - OOG6_102794
Panther 1 1.100 - - LDO PTHR10693
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R463
SonicParanoid 1 1.000 - - X634
TreeFam 00.000 Not matched by this tool.
88.030

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