DRSC/TRiP Functional Genomics Resources

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Protein Alignment NFX1 and stc

DIOPT Version :9

Sequence 1:NP_001305687.1 Gene:NFX1 / 4799 HGNCID:7803 Length:1121 Species:Homo sapiens
Sequence 2:NP_476599.1 Gene:stc / 34888 FlyBaseID:FBgn0001978 Length:1106 Species:Drosophila melanogaster


Alignment Length:1041 Identity:393/1041 - (37%)
Similarity:543/1041 - (52%) Gaps:109/1041 - (10%)


- Green bases have known domain annotations that are detailed below.


Human    72 SYHPSGSKPKSQQTSFQSSPCNKSPKSHGLQNQPWQKLRNEKHHIRVKKAQSLAEQT-------- 128
            |.:||.|...|..|.|.::|.:.|.          .||:..........|:...|:|        
  Fly   142 SVNPSNSNFSSFYTPFGNNPFDFSA----------SKLQASAPEFVPNFAKLSLEETPAAATTNG 196

Human   129 SDTAGLESSTRSESGTDLREHSPSESEKEVVGADPRGAKPKKATQFVYSYGR-GPKVKGKLKCEW 192
            :.||.||::........||...|:|          |||..:.:.   ::|.| ..:.:.:.:...
  Fly   197 NSTASLETAINETRPRTLRAQEPAE----------RGANNQCSN---HNYERERERERDRDRDRE 248

Human   193 SNRTTPKPEDAGPESTKPVGVFHPDSSEASSRKGVLDGYGARRNEQRRYPQKRPPWEVEGARPRP 257
            .:|...:..|...:..:     ..||...::|:.....|  |.:.:.||.:.            .
  Fly   249 RDRDRDRDRDRDRDRDR-----DRDSRPGNTRQQRRSDY--RDDREDRYERS------------D 294

Human   258 GRNPPKQEGHRHTNAGHRNNMGPIPKDDLNERPAKSTCDSENLAVINKSSRRVDQEKCTVRRQDP 322
            .|.|.||:  |:.|  ||:|.   .:||.|          .|...||...|.||....:.....|
  Fly   295 RRRPQKQQ--RYDN--HRSNK---RRDDWN----------RNRDRINGFPRAVDDLDTSNESAHP 342

Human   323 --------QVVSPFSRG-----KQNHVLKNVETHTGSLIEQLTTEKYECMVCCELVRVTAPVWSC 374
                    |.:|| .||     ..|..|...|    .|:..:...:.||:||.|.::...|.|||
  Fly   343 SPEKQSQLQQISP-RRGPPLPPADNEKLSQRE----KLVRDIEQRRLECLVCVEAIKSHQPTWSC 402

Human   375 QSCYHVFHLNCIKKWARSPASQADGQSGWRCPACQNVSAHVPNTYTCFCGKVKNPEWSRNEIPHS 439
            ::|||:.||.|...||.|..|:.    ||||||||||...:|..|.|||||:|||..||.|:.||
  Fly   403 RNCYHMLHLKCTITWASSSKSEV----GWRCPACQNVLQDLPRDYLCFCGKLKNPPVSRTELAHS 463

Human   440 CGEVCRKKQPGQDCPHSCNLLCHPGPCPPCPAFMTKTCECGRTRHTVRCGQAVSVHCSNPCENIL 504
            |||||.:.   :.|.|:|.|||||||||||.|.:.::|.|||:..|::|.....|.|...|:.:|
  Fly   464 CGEVCCRI---EGCSHACTLLCHPGPCPPCQANVVRSCGCGRSTKTMQCAMKEEVLCGEICDKLL 525

Human   505 NCGQHQCAELCHGGQCQPCQIILNQVCYCGSTSRDVLCGTDVGKSDGFGDFSCLKICGKDLKCGN 569
            |||:|:|...||.|:|..|...:.|.|:||...|.|.|   ..:|.....:||...||:.|.||:
  Fly   526 NCGEHRCQAECHSGKCAACSEQVVQQCHCGKQERKVPC---TRESQDKRTYSCKDSCGQPLPCGH 587

Human   570 HTCSQVCHPQPCQQCPRLPQLVRCCPCGQTPLSQLLELGSSSRKTCMDPVPSCGKVCGKPLPCGS 634
            |.|...||...|:.|...|:.:..||||:.|:.      :..|.:|:||:|:|..:|.:.|.||.
  Fly   588 HKCKDSCHAGSCRPCKLSPEQITSCPCGKMPVP------AGQRSSCLDPIPTCEGICSRTLRCGK 646

Human   635 LDFIHTCEKLCHEGDCGPCSRTSVISCRCSFRTKELPCTSLKSEADATFMCDKRCNKKRLCGRHK 699
            ....|.|...||.|.|.||.:.:.:.|||....:.:.|..|.:.||.. .|.:||.|||.||:||
  Fly   647 PAHPHQCGSKCHLGQCPPCPKQTGVKCRCGHMDQMIKCRQLCNRADDA-RCKRRCTKKRSCGKHK 710

Human   700 CNEICCVDKEHKCPLICGRKLRCGLHRCEEPCHRGNCQTCWQASFDELTCHCGASVIYPPVPCGT 764
            ||..||:|.:|.|||.|.|.|.||.|:|::|||||||..|:::||:||.|.|||.||||||||||
  Fly   711 CNVECCIDIDHDCPLPCNRTLSCGKHKCDQPCHRGNCPPCYRSSFEELYCECGAEVIYPPVPCGT 775

Human   765 RPPECTQTCARVHECDHPVYHSCHSEEKCPPCTFLTQKWCMGKHEFRSNIPCHLVDISCGLPCSA 829
            :.|.|...|:|:|.||||..|:|||...||||...|.|.|.|.||.|..|||...:.|||:.|..
  Fly   776 KKPICKLPCSRIHPCDHPPQHNCHSGPTCPPCMIFTTKLCHGNHELRKTIPCSQPNFSCGMACGK 840

Human   830 TLPCGMHKCQRLCHKGEC-LVDEPCKQPCTTPRADCGHPCMAPCHTSSPCPVTACKAKVELQCEC 893
            .||||.|||.:.||:|.| ...|.|:|.||.||..|||.|.|.||..: ||.|.||..||:||||
  Fly   841 PLPCGGHKCIKPCHEGPCQSAGEICRQSCTKPRPTCGHKCAAACHEGA-CPETPCKELVEVQCEC 904

Human   894 GRRKEMVICSEASSTYQRIAAISMASKITDMQLGGSVEISKLITKKEVHQARLECDEECSALERK 958
            |.||:...|.|.:..:.|||.|.:||.:.:|..|..:|:|:::...:.....|:|::||..|||.
  Fly   905 GNRKQNRSCQELAREHSRIATIQLASSMAEMSRGNYMELSEILAPAKKSNKTLDCNDECRLLERN 969

Human   959 KRLAEAFHISEDSDPFNIRSSGSKFSDSLKEDARKDLKFVSDVEKEMETLVEAVNKGKNSKKSHS 1023
            :|||.|.. |.:||  ..:...:|:|:.::..|:|:......|.:.:..||:...:.|...:|||
  Fly   970 RRLAAALS-SGNSD--TKQKCLTKYSEFVRGFAKKNPALTKSVYETLTDLVKLAKESKQRSRSHS 1031

Human  1024 FPPMNRDHRRIIHDLAQVYGLESVSYDSEPKRNVVVTAIRGKSVCPPTTLTGVLEREM-QARPPP 1087
            ||.|||:.|:::|:|.:|:|:||||||.||.||||.||.:.:...|.|::..||.||. |.|.|.
  Fly  1032 FPTMNREKRQLVHELCEVFGIESVSYDKEPNRNVVATAHKDRCWFPATSIMEVLARESGQRRVPV 1096

Human  1088 P 1088
            |
  Fly  1097 P 1097

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NFX1NP_001305687.1 Interaction with PABPC1 and PABC4. /evidence=ECO:0000269|PubMed:17267499 9..26
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 22..295 48/231 (21%)
NF-X1-zinc-finger 496..544 CDD:100116 20/47 (43%)
NF-X1-zinc-finger 557..599 CDD:100116 17/41 (41%)
NF-X1-zinc-finger 622..674 CDD:100116 17/51 (33%)
NF-X1-zinc-finger 685..733 CDD:100116 28/47 (60%)
NF-X1-zinc-finger 712..764 CDD:100116 34/51 (67%)
NF-X1-zinc-finger 823..868 CDD:100116 24/45 (53%)
R3H_NF-X1 988..1061 CDD:100072 31/72 (43%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1082..1110 4/7 (57%)
stcNP_476599.1 NF-X1-zinc-finger 464..510 CDD:100116 25/48 (52%)
NF-X1-zinc-finger 517..565 CDD:100116 20/50 (40%)
NF-X1-zinc-finger 575..617 CDD:100116 17/41 (41%)
NF-X1-zinc-finger 634..686 CDD:100116 17/51 (33%)
NF-X1-zinc-finger 723..775 CDD:100116 34/51 (67%)
NF-X1-zinc-finger 834..882 CDD:100116 25/47 (53%)
NF-X1-zinc-finger 865..915 CDD:100116 28/50 (56%)
R3H_NF-X1 996..1069 CDD:100072 31/72 (43%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165156871
Domainoid 1 1.000 128 1.000 Domainoid score I5348
eggNOG 1 0.900 - - E1_KOG1952
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H1875
Inparanoid 1 1.050 739 1.000 Inparanoid score I595
Isobase 1 0.950 - 0 Normalized mean entropy S2168
OMA 1 1.010 - - QHG52859
OrthoDB 1 1.010 - - D299100at2759
OrthoFinder 1 1.000 - - FOG0004250
OrthoInspector 1 1.000 - - oto90137
orthoMCL 1 0.900 - - OOG6_103027
Panther 1 1.100 - - LDO PTHR12360
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R432
SonicParanoid 1 1.000 - - X2986
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1716.750

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