DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment l(2)03659 and rdog

DIOPT Version :9

Sequence 1:NP_001260823.1 Gene:l(2)03659 / 47905 FlyBaseID:FBgn0010549 Length:1374 Species:Drosophila melanogaster
Sequence 2:NP_651678.1 Gene:rdog / 43450 FlyBaseID:FBgn0039644 Length:1374 Species:Drosophila melanogaster


Alignment Length:1389 Identity:558/1389 - (40%)
Similarity:828/1389 - (59%) Gaps:138/1389 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    79 QNEKEKVLPENPRARSNFISSLCFWYTIPIFRKGYRKTLDSTDLYRPLEEQKSDILGNRLCASWE 143
            :..::.|.|:||..::||.|...||:...:|::|.:..|...:||:..:...|:.:.|:....||
  Fly     3 RTRRKVVRPKNPFTKANFFSQWSFWWMRDLFKRGLQGPLTDEELYQHRKTLDSERVTNKFAELWE 67

  Fly   144 RELKNDGRSPSLVRALLRVFGWQLGFP-GLAIFVVELGLRTLQPIFLVKLISYF-SGEPD-AANA 205
            .|||..  :||:||.:||.:| ::..| |||..:.|...::|.|:||..|:.|| :.:.| :.|.
  Fly    68 DELKRS--NPSVVRMILRAYG-KIFVPMGLAFSISETICKSLMPLFLGGLVGYFATNQTDISENT 129

  Fly   206 GFYYAVAQIVISALTVMILTPTTFGIHHVCFKMRVAMGSMIFRKALRLTKGALGDTTSGHVVNLI 270
            .:.||:..::...:.|:...|..|.|..|..|:|:|:..:|:||.|:::|.:..|...|..:|::
  Fly   130 AYLYAMGIVICMLVPVITFHPFIFYIFQVGTKLRLALSGLIYRKVLQVSKSSSNDGLRGRAINIL 194

  Fly   271 SNDIPRLDSAPYTVHYLWVGPLQVLVITYLMYQEIGISAVFGVLFMLLFMPIQMYLGTRTSAIQL 335
            |||:.|.|.|...:|..|.||::.::|.:|||:|||||||.||.|||.|:|:|.:...:.:..:.
  Fly   195 SNDLGRFDVALCFLHDTWKGPMESILIGFLMYREIGISAVIGVSFMLSFIPLQAWAAKKAAYYRQ 259

  Fly   336 KAAERTDNRIRMVNEIISAIQVLKMYAWEQPFEQMVTHAREKEMNTIRQGQYIRGFDFARRIVLS 400
            ..|||||.|::::||||..|||:||||||:.|.:::...|.||:..||...||.. ......::|
  Fly   260 MTAERTDMRVKLMNEIIQGIQVIKMYAWEKSFARVIAEVRLKEVKAIRGTAYIHA-ALGCTSMIS 323

  Fly   401 RVAIFLSLVGYVILGKVFTPEIAFMITAYYNVLLAAMSIYVPSAIIQTAQFLTSIRRVEQFMQSE 465
            .:::||:|..||.||...|.:..:.:::|:|:|..:|..:.|.:|...|:.|.|.:|.:.|    
  Fly   324 PLSVFLALCSYVYLGDPLTAQKVYTVSSYFNMLNDSMVTFWPMSITFIAEALVSAKRCKDF---- 384

  Fly   466 ELGSSDKSEGP-----------------SKD-----TVPGNPPSNNN---------EADLLKSAI 499
             |...||:|.|                 .||     .:.|:..||..         :.:..|..:
  Fly   385 -LLDGDKAEVPINLEANQQTGKNKRKISKKDKQKNVELNGSLLSNGQVHHNRLRDYDPEATKKCV 448

  Fly   500 SIRDLKAKWDPNS--PDYTLSGINLEIKPGSVVAVIGLTGSGKSSLIQAILGELKANSGQLQVNG 562
            .::::.|.||.:.  .:..:...:.:||..::.||:|..|:||||.:..:|||:..:.|:..|:|
  Fly   449 VLKNVSASWDTSDGHANCAIEDFSTDIKDQTLAAVVGPVGAGKSSFLNVLLGEVGIDKGEAMVHG 513

  Fly   563 SLSYTSQESWLFSGTVRQNILFGQPMDSQRYEEVVKKCALERDFDLLPLRDNTIVGERGATLSGG 627
            .:||.|||||:|.||:|.||:|.:..:.:||::|||.|.||||.:|||..|.|:|||||.:||||
  Fly   514 KISYASQESWVFEGTIRDNIVFVEDYNERRYKKVVKVCGLERDMELLPRGDLTVVGERGVSLSGG 578

  Fly   628 QKARISLARSVYRKASIYLLDDPLSAVDASVARHLFDQCVRGHLRGSTVVLVTHQEQFLPHVDQI 692
            ||||:||||:|||||.||||||||||||..|.:|:||:|:|..|.....:|||||.|:|..|:.:
  Fly   579 QKARVSLARAVYRKADIYLLDDPLSAVDTHVGKHIFDRCIRDFLSNKIRILVTHQVQYLFDVEHL 643

  Fly   693 VILANGQIKALGDYESLLK--------------TGLITGLGS--LSKTDKAKTEEQEPLNLNSPD 741
            :::.:|:|.|.|.|:.|.:              :|:.|...|  ||::|..|:.|.:...|..||
  Fly   644 LLMGSGKIMAQGSYQELQRSRQFQFLEQTQHDESGIDTHSVSSYLSRSDSEKSMEHQHNQLLRPD 708

  Fly   742 NKNEVTPIKENSEQTVGGSSSGKEHV-----ERQESGGISLALYRKYFQAGGGLVAFLVMLSSSV 801
                                   |||     |:|..|.|.:.:|..|.:|........:::|..|
  Fly   709 -----------------------EHVEDVNQEQQTVGSIKMHVYASYIKALDSTFLLGIVISLFV 750

  Fly   802 LAQVAVTGGDYFLTYWV----------------KKESTAAGHGEMEDMESKSMDVY--------- 841
            .|::.:||.||||:.||                :.::|.|.    :.:...:.|.|         
  Fly   751 CARIMLTGVDYFLSRWVIWEEQIAVNRTTTLLNETDTTIAN----DTLPINATDPYIAPLLASDI 811

  Fly   842 ----------KYTLIIILSVIMNLSSSFLLFNIAKKASIRLHNTIFNRVTRADMHFFSINKHGSI 896
                      .|..|:..::|:.|..:|..|.:..:.|:.||:.:|..:|||.|:||:.|..|.|
  Fly   812 QAGIRQELVLFYATILGATLIVYLIRTFGFFKMCLRISLHLHDRLFRGITRASMYFFNTNSSGRI 876

  Fly   897 LNRFTKDMSQVDEVLPVVLVDVMQIALWLAGIIIVIANVNPLLLVPTLMLSVIFYHLRNLYLKTS 961
            ||||:||:..||..||..|:|.:...:.::|::|::|..|..||:|..::.||...:|.||:.||
  Fly   877 LNRFSKDIRTVDTDLPHTLLDCLAFIIDVSGVVIIVAIANYWLLIPAAIIGVILGMIRYLYVNTS 941

  Fly   962 RDLKRVEAINRSPVYSHLAASLNGLTTIRALDAQRVLEKEFDSYQDAHSSAFFMYISTSQAFGYC 1026
            |.:||:|:|:||||:|....:..||||||||.||..||:||..||:.::||:|:::|.::||...
  Fly   942 RSVKRLESISRSPVFSLTNQTFQGLTTIRALQAQSALEQEFHEYQNTNTSAWFLFLSCTRAFALW 1006

  Fly  1027 MNCICVIYISIITLSFF----AFPPGNGADVGLVITQAMGLIDMVQWGVRQTAELENTMTAVERV 1087
            .:.:|::|::.:|.||.    .|..|   ||||.|..:..:..|.|||:||||||||.||:||||
  Fly  1007 SDVLCIVYMTAVTFSFLLLKDEFDSG---DVGLAILHSTTMTGMCQWGMRQTAELENQMTSVERV 1068

  Fly  1088 VEYESIEPEGMLEAPDDKKPPKTWPEQGEIIFKELNLRYTPNAKAENVLKSLSFVIQPREKVGIV 1152
            :||.....|.:||.|:..||...||.:|.|.|....|||:|  |...|||.|:|.|:||||:|||
  Fly  1069 LEYTEQPSEALLETPEKFKPKSEWPSKGRIEFINFKLRYSP--KEAPVLKDLNFTIEPREKIGIV 1131

  Fly  1153 GRTGAGKSSLINALFRLSYTDGSVLIDTRDTRQMGLHDLRRQISIIPQEPVLFSGTMRYNLDPFD 1217
            |||||||||:|.::|||:..:|.:.||..|...:||||||.|:|||||:|||||||:||||||.|
  Fly  1132 GRTGAGKSSIIQSIFRLACNEGMIRIDDVDIEHIGLHDLRSQVSIIPQDPVLFSGTLRYNLDPMD 1196

  Fly  1218 EYSDEKLWGCLEEVKLKEVVSDLPDGLASKISEGGTNFSVGQRQLVCLARAILRENRILVMDEAT 1282
            |.|||::|..|.:|:|:..||.|..||..::.:||:||||||||||||||||||.|:||:|||||
  Fly  1197 ERSDEEMWKALGDVELRSYVSTLIGGLNCRMYDGGSNFSVGQRQLVCLARAILRHNKILIMDEAT 1261

  Fly  1283 ANVDPQTDGLIQATIRSKFRDCTVLTIAHRLHTIIDSDKVMVMDAGRVVEFGSPYELMTKSDSKV 1347
            |||||:||.|||.||||||..||||||||||||::|||:|:|||||.|.|.|.||||:.::.. .
  Fly  1262 ANVDPETDKLIQQTIRSKFAHCTVLTIAHRLHTVMDSDRVLVMDAGEVRELGHPYELLQRTGG-Y 1325

  Fly  1348 FHNLVNQSGRASYEGLLKIAQETF 1371
            ...||:.:|.|:...|.:.|::::
  Fly  1326 LRQLVDNTGAATSFALQQAAEQSY 1349

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(2)03659NP_001260823.1 CFTR_protein 89..1343 CDD:273530 550/1349 (41%)
ABC_membrane 171..437 CDD:294371 99/267 (37%)
ABCC_MRP_domain1 499..699 CDD:213217 97/201 (48%)
ABC_membrane 799..1045 CDD:294371 96/284 (34%)
ABCC_MRP_domain2 1115..1336 CDD:213211 145/220 (66%)
rdogNP_651678.1 CFTR_protein 12..1343 CDD:273530 555/1372 (40%)
ABC_membrane 94..360 CDD:294371 98/266 (37%)
ABCC_MRP_domain1 448..650 CDD:213217 97/201 (48%)
ABC_membrane 821..1046 CDD:294371 89/227 (39%)
ABCC_MRP_domain2 1096..1315 CDD:213211 145/220 (66%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45440900
Domainoid 1 1.000 179 1.000 Domainoid score I1056
eggNOG 1 0.900 - - E2759_KOG0054
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 133 1.000 Inparanoid score I246
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D138195at2759
OrthoFinder 1 1.000 - - FOG0001028
OrthoInspector 1 1.000 - - otm14754
orthoMCL 1 0.900 - - OOG6_100026
Panther 1 1.100 - - P PTHR24223
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X771
1110.800

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